Protein Domain : IPR013757

Type:  Domain Name:  Type IIA DNA topoisomerase subunit A, alpha-helical domain
Description:  Type IIA topoisomerases include the enzymes DNA gyrase, eukaryotic topoisomerase II (topo II), and bacterial topoisomerase IV (topo IV). Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA [].Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB.This entry represents a mainly alpha helical subdomain of eukaryotic topoisomerase II domain 3, also found in subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV. Short Name:  Topo_IIA_A_a

0 Child Features

0 Contains

1 Cross References

Identifier
G3DSA:1.10.268.10

3 Found Ins

DB identifier Type Name
IPR005743 Family DNA gyrase, subunit A
IPR013760 Domain DNA topoisomerase, type IIA-like domain
IPR002205 Domain DNA topoisomerase, type IIA, subunit A/C-terminal

4 GO Annotations

GO Term Gene Name
GO:0003677 IPR013757
GO:0003918 IPR013757
GO:0005524 IPR013757
GO:0006265 IPR013757

4 Ontology Annotations

GO Term Gene Name
GO:0003677 IPR013757
GO:0003918 IPR013757
GO:0005524 IPR013757
GO:0006265 IPR013757

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
404454 D8QVD7 PAC:15410252 Selaginella moellendorffii 617  
evm.model.supercontig_125.26 PAC:16407255 Carica papaya 576  
evm.model.supercontig_24.23 PAC:16414474 Carica papaya 252  
evm.model.supercontig_386.1 PAC:16418964 Carica papaya 66  
29743.m000297 B9SK06 PAC:16807685 Ricinus communis 540  
29827.m002587 B9S1K7 PAC:16810020 Ricinus communis 220  
29864.m001478 B9RVN3 PAC:16811789 Ricinus communis 1212  
29937.m000197 B9T1K7 PAC:16814197 Ricinus communis 76  
30122.m000352 B9SII8 PAC:16818103 Ricinus communis 68  
30146.m003494 B9RQD2 PAC:16819616 Ricinus communis 283  
30205.m001596 B9RSM2 PAC:16823973 Ricinus communis 687  
Cucsa.322300.1 PAC:16977736 Cucumis sativus 214  
Cucsa.322300.2 A0A0A0L507 PAC:16977737 Cucumis sativus 213  
Cucsa.161710.2 PAC:16965544 Cucumis sativus 231  
Cucsa.161710.3 PAC:16965545 Cucumis sativus 172  
Cucsa.161710.1 PAC:16965543 Cucumis sativus 232  
Cucsa.192950.1 PAC:16968026 Cucumis sativus 213  
Cucsa.249000.2 PAC:16971531 Cucumis sativus 1303  
Cucsa.249000.3 PAC:16971532 Cucumis sativus 1239  
Cucsa.249000.1 PAC:16971530 Cucumis sativus 1499  
orange1.1g024358m A0A067FIU0 PAC:18109124 Citrus sinensis 268  
orange1.1g028723m A0A067FMG0 PAC:18109125 Citrus sinensis 205  
orange1.1g028026m A0A067E5L4 PAC:18139241 Citrus sinensis 215  
orange1.1g028112m A0A067EGM1 PAC:18139226 Citrus sinensis 213  
orange1.1g000459m PAC:18101881 Citrus sinensis 1484  
AT4G19100.1 O49668 PAC:19645847 Arabidopsis thaliana 214  
AT5G24890.1 Q8L9W8 PAC:19668518 Arabidopsis thaliana 240  
AT3G23890.1 P30182 PAC:19661529 Arabidopsis thaliana 1473  
AT3G23890.2 B3H4G2 PAC:19661530 Arabidopsis thaliana 1438  
AT3G28956.1 F4J1Q7 PAC:19663060 Arabidopsis thaliana 137  

2 Publications

First Author Title Year Journal Volume Pages PubMed ID
            16023670
            8982450