An InterMine interface to data from Phytozome
Show the proteins for a particular gene.
Retrieve the homologs of a specific gene in any organism as determined by inParanoid
Show all the flanking sequence for a particular gene.
Show all the proteins from a particular organism.
Look up the GO terms associated with a single gene with a specified transcript, or save a list of transcripts and look up GO terms for all genes with transcripts on your list.
Finds all homologous pairs of genes as determined by inParanoid between two specified species
Display the consensus sequence for a specific protein family.
Display the names of the gene, transcript, proteins and deflines for a specifc gene.
Look up the GO terms associated with a single protein, or save a list of proteins and look up GO terms for all proteins on your list.
Either enter a GO term into the identifier box or create a list of GO identifiers from another query or paste into the list box. If supplying a list, type the name of the saved list pulldown menu.
Search for proteins in any organism with two specified PFAM (or Panther...) domains
Show all the transcript sequences for a particular gene.
Displays the conceptual translation of a transcript's CDS
Display the nucleotide sequence of the CDS of a specific transcript.
Displays the nucleotide sequence of a specific transcript.
Find the direct child terms of a specific GO term
Show all the mRNAs from a particular organism and their nucleotide sequence.
Look up the GO terms associated with a gene, or use a saved list of genes and look up the GO terms associated with all genes on the list.
Display the peptide sequences for a specific protein family.
Displays the annotated peptide sequence for a specific protein.