Gene : Phvul.010G030200 P. vulgaris v2.1
Defline:  (1 of 2) K03012 - DNA-directed RNA polymerase II subunit RPB4 (RPB4, POLR2D) Genomic Order:  302
Name:  ? Phvul.010G030200 Secondary Identifier:  ? PAC:37144116
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G030200 0.5kb upstream 0.5kb upstream 4284 true Chr10: 4375919-4380202 Phaseolus vulgaris
Phvul.010G030200 0.5kb upstream 0.5kb upstream 500 false Chr10: 4379703-4380202 Phaseolus vulgaris
Phvul.010G030200 0.5kb downstream 0.5kb downstream 4284 true Chr10: 4375419-4379702 Phaseolus vulgaris
Phvul.010G030200 0.5kb downstream 0.5kb downstream 500 false Chr10: 4375419-4375918 Phaseolus vulgaris
Phvul.010G030200 1.0kb upstream 1.0kb upstream 4784 true Chr10: 4375919-4380702 Phaseolus vulgaris
Phvul.010G030200 1.0kb upstream 1.0kb upstream 1000 false Chr10: 4379703-4380702 Phaseolus vulgaris
Phvul.010G030200 1.0kb downstream 1.0kb downstream 4784 true Chr10: 4374919-4379702 Phaseolus vulgaris
Phvul.010G030200 1.0kb downstream 1.0kb downstream 1000 false Chr10: 4374919-4375918 Phaseolus vulgaris
Phvul.010G030200 2.0kb upstream 2.0kb upstream 5784 true Chr10: 4375919-4381702 Phaseolus vulgaris
Phvul.010G030200 2.0kb upstream 2.0kb upstream 2000 false Chr10: 4379703-4381702 Phaseolus vulgaris
Phvul.010G030200 2.0kb downstream 2.0kb downstream 5784 true Chr10: 4373919-4379702 Phaseolus vulgaris
Phvul.010G030200 2.0kb downstream 2.0kb downstream 2000 false Chr10: 4373919-4375918 Phaseolus vulgaris
Phvul.010G030200 5.0kb upstream 5.0kb upstream 8784 true Chr10: 4375919-4384702 Phaseolus vulgaris
Phvul.010G030200 5.0kb upstream 5.0kb upstream 5000 false Chr10: 4379703-4384702 Phaseolus vulgaris
Phvul.010G030200 5.0kb downstream 5.0kb downstream 8784 true Chr10: 4370919-4379702 Phaseolus vulgaris
Phvul.010G030200 5.0kb downstream 5.0kb downstream 5000 false Chr10: 4370919-4375918 Phaseolus vulgaris
Phvul.010G030200 10.0kb upstream 10.0kb upstream 13784 true Chr10: 4375919-4389702 Phaseolus vulgaris
Phvul.010G030200 10.0kb upstream 10.0kb upstream 10000 false Chr10: 4379703-4389702 Phaseolus vulgaris
Phvul.010G030200 10.0kb downstream 10.0kb downstream 13784 true Chr10: 4365919-4379702 Phaseolus vulgaris
Phvul.010G030200 10.0kb downstream 10.0kb downstream 10000 false Chr10: 4365919-4375918 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305917 5265 Fabidae View MSA
124060840 5270 Rosid View MSA
123744062 5271 Pentapetalae View MSA
122792383 5272 Eudicot View MSA
122048092 5273 Angiosperm View MSA
123429036 5275 Viridiplantae View MSA
121349369 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 42.4598 0.0 110.776 High High
cufflinks 27.2208 0.0 73.1534    
cufflinks 25.7277 0.0 69.2207    
cufflinks 42.6349 0.0 111.388 High High
cufflinks 21.7415 0.0 59.9315   Low
cufflinks 19.5192 0.0 53.8917   Low
cufflinks 25.8299 0.0 69.5856    
cufflinks 25.5295 0.0 68.7953    
cufflinks 25.9407 0.0 69.9383    
cufflinks 31.1204 0.0 83.0093    
cufflinks 26.4297 0.0 71.4211    

0 Strain