Gene : Tp57577_TGAC_v2_gene19091 T. pratense v2
Defline:  (1 of 6) PF00665//PF07727//PF13976 - Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // GAG-pre-integrase domain (gag_pre-integrs) Genomic Order:  870
Name:  ? Tp57577_TGAC_v2_gene19091 Secondary Identifier:  ? PAC:35974026
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene19091 0.5kb upstream 0.5kb upstream 5264 true Tp57577_TGAC_v2_LG6: 6744528-6749791 Trifolium pratense
Tp57577_TGAC_v2_gene19091 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG6: 6749292-6749791 Trifolium pratense
Tp57577_TGAC_v2_gene19091 0.5kb downstream 0.5kb downstream 5264 true Tp57577_TGAC_v2_LG6: 6744028-6749291 Trifolium pratense
Tp57577_TGAC_v2_gene19091 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG6: 6744028-6744527 Trifolium pratense
Tp57577_TGAC_v2_gene19091 1.0kb upstream 1.0kb upstream 5764 true Tp57577_TGAC_v2_LG6: 6744528-6750291 Trifolium pratense
Tp57577_TGAC_v2_gene19091 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG6: 6749292-6750291 Trifolium pratense
Tp57577_TGAC_v2_gene19091 1.0kb downstream 1.0kb downstream 5764 true Tp57577_TGAC_v2_LG6: 6743528-6749291 Trifolium pratense
Tp57577_TGAC_v2_gene19091 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG6: 6743528-6744527 Trifolium pratense
Tp57577_TGAC_v2_gene19091 2.0kb upstream 2.0kb upstream 6764 true Tp57577_TGAC_v2_LG6: 6744528-6751291 Trifolium pratense
Tp57577_TGAC_v2_gene19091 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG6: 6749292-6751291 Trifolium pratense
Tp57577_TGAC_v2_gene19091 2.0kb downstream 2.0kb downstream 6764 true Tp57577_TGAC_v2_LG6: 6742528-6749291 Trifolium pratense
Tp57577_TGAC_v2_gene19091 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG6: 6742528-6744527 Trifolium pratense
Tp57577_TGAC_v2_gene19091 5.0kb upstream 5.0kb upstream 9764 true Tp57577_TGAC_v2_LG6: 6744528-6754291 Trifolium pratense
Tp57577_TGAC_v2_gene19091 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG6: 6749292-6754291 Trifolium pratense
Tp57577_TGAC_v2_gene19091 5.0kb downstream 5.0kb downstream 9764 true Tp57577_TGAC_v2_LG6: 6739528-6749291 Trifolium pratense
Tp57577_TGAC_v2_gene19091 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG6: 6739528-6744527 Trifolium pratense
Tp57577_TGAC_v2_gene19091 10.0kb upstream 10.0kb upstream 14764 true Tp57577_TGAC_v2_LG6: 6744528-6759291 Trifolium pratense
Tp57577_TGAC_v2_gene19091 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG6: 6749292-6759291 Trifolium pratense
Tp57577_TGAC_v2_gene19091 10.0kb downstream 10.0kb downstream 14764 true Tp57577_TGAC_v2_LG6: 6734528-6749291 Trifolium pratense
Tp57577_TGAC_v2_gene19091 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG6: 6734528-6744527 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121782523 5273 Angiosperm View MSA
122231448 5265 Fabidae View MSA
124041093 5270 Rosid View MSA
123753055 5271 Pentapetalae View MSA
122774934 5272 Eudicot View MSA
121054037 5274 Embryophyte View MSA
123094036 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain