Protein Domain : IPR006293

Type:  Family Name:  DNA helicase, ATP-dependent, RecQ type, bacterial
Description:  The ATP-dependent DNA helicase RecQ () is involved in genome maintenance []. All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novosynthesis DNA, such as the replication fork, and protein levels peak during S-phase.A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that isnecessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)-DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and theRecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. Short Name:  DNA_helicase_ATP-dep_RecQ_bac

0 Child Features

6 Contains

DB identifier Type Name
IPR014001 Domain Helicase superfamily 1/2, ATP-binding domain
IPR001650 Domain Helicase, C-terminal
IPR011545 Domain DEAD/DEAH box helicase domain
IPR018982 Domain RQC domain
IPR002121 Domain HRDC domain
IPR010997 Domain HRDC-like

1 Cross References

Identifier
TIGR01389

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0004003 IPR006293
GO:0006310 IPR006293
GO:0009432 IPR006293

3 Ontology Annotations

GO Term Gene Name
GO:0004003 IPR006293
GO:0006310 IPR006293
GO:0009432 IPR006293

1 Parent Features

DB identifier Type Name
IPR004589 Family DNA helicase, ATP-dependent, RecQ type

8 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
Brdisv1pangenome1006468m.p PAC:33620373 Brachypodium distachyon Pangenome 636  
Brdisv1pangenome1008006m.p PAC:33658062 Brachypodium distachyon Pangenome 648  
Brdisv1pangenome1010090m.p PAC:33656509 Brachypodium distachyon Pangenome 1061  
Brdisv1BdTR12c1039964m.p PAC:34403386 Brachypodium distachyon BdTR12c 801  
Brdisv1BdTR11A1040782m.p PAC:35692446 Brachypodium distachyon BdTR11a 1073  
Brdisv1BdTR11A1040267m.p PAC:35694707 Brachypodium distachyon BdTR11a 715  
Brdisv1BdTR11A1041313m.p PAC:35693443 Brachypodium distachyon BdTR11a 636  
Brdisv1BdTR11A1041295m.p PAC:35693697 Brachypodium distachyon BdTR11a 857  

1 Publications

First Author Title Year Journal Volume Pages PubMed ID
            12354611