Protein Domain : IPR002121

Type:  Domain Name:  HRDC domain
Description:  The HRDC (helicase and RNaseD C-terminal) domain is comprised of two orthogonally packed alpha-hairpin subdomains, and is involved in interactions with DNA and protein. HRDC domains are found at the C terminus of many RecQ helicases, including the human Werner and Bloom syndrome proteins []. RecQ helicases have been shown to unwind DNA in an ATP-dependent manner. The structure of the HRDC domain consists of a 4-5 helical bundle of two orthogonally packed alpha-hairpins, and as such it resembles auxiliary domains in bacterial DNA helicases and other proteins that interact with nucleic acids. A positively charged region on the surface of the HRDC domain is able to interact with DNA.The HRDC domain is also present in eukaryotic and archaeal RNA polymerase II subunit RBP4, the N-terminal of which forms a heterodimerisation alpha-hairpin [, ].The HRDC domain has a putative role in nucleic acid binding. Mutations in the HRDC domain associated with the human BLM gene result in Bloom Syndrome (BS), an autosomal recessive disorder characterised by proportionate pre- and postnatal growth deficiency; sun-sensitive, telangiectatic, hypo- and hyperpigmented skin; predisposition to malignancy; and chromosomal instability []. Short Name:  HRDC_dom

1 Child Features

DB identifier Type Name
IPR022758 Domain ATP-dependent helicase Sgs1

1 Contains

DB identifier Type Name
IPR010997 Domain HRDC-like

4 Cross Referencess

Identifier
PF00570
PS50967
SM00341
G3DSA:1.10.150.80

4 Found Ins

DB identifier Type Name
IPR004589 Family DNA helicase, ATP-dependent, RecQ type
IPR006293 Family DNA helicase, ATP-dependent, RecQ type, bacterial
IPR022758 Domain ATP-dependent helicase Sgs1
IPR006292 Family Ribonuclease D

2 GO Annotations

GO Term Gene Name
GO:0003676 IPR002121
GO:0005622 IPR002121

2 Ontology Annotations

GO Term Gene Name
GO:0003676 IPR002121
GO:0005622 IPR002121

1 Parent Features

DB identifier Type Name
IPR010997 Domain HRDC-like

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
10140 D8RF20 PAC:15419664 Selaginella moellendorffii 703  
105080 D8RZC1 PAC:15411959 Selaginella moellendorffii 711  
84661 D8R4J7 PAC:15418647 Selaginella moellendorffii 512  
402571 D8QR38 PAC:15405093 Selaginella moellendorffii 935  
evm.model.supercontig_161.19 PAC:16410187 Carica papaya 468  
evm.model.supercontig_3.343 PAC:16416639 Carica papaya 138  
evm.model.supercontig_31.48 PAC:16417193 Carica papaya 341  
evm.model.supercontig_87.78 PAC:16427749 Carica papaya 750  
29757.m000755 B9SHR6 PAC:16808028 Ricinus communis 138  
29827.m002578 B9S1J8 PAC:16810011 Ricinus communis 714  
29836.m000577 B9SGB4 PAC:16810289 Ricinus communis 203  
29907.m000626 B9SK67 PAC:16812734 Ricinus communis 795  
30072.m000959 B9SI83 PAC:16816749 Ricinus communis 857  
28725.m000320 B9SXG0 PAC:16801606 Ricinus communis 1233  
29600.m000554 B9SDW9 PAC:16803495 Ricinus communis 977  
Cucsa.365400.1 PAC:16981408 Cucumis sativus 206  
Cucsa.044470.1 PAC:16953210 Cucumis sativus 262  
Cucsa.148550.1 PAC:16964167 Cucumis sativus 884  
Cucsa.149920.1 A0A0A0L974 PAC:16964363 Cucumis sativus 708  
Cucsa.032980.1 PAC:16952512 Cucumis sativus 574  
Cucsa.334770.1 PAC:16978458 Cucumis sativus 935  
Cucsa.349610.2 PAC:16979817 Cucumis sativus 428  
Cucsa.349610.1 PAC:16979816 Cucumis sativus 452  
orange1.1g044490m PAC:18103225 Citrus sinensis 430  
orange1.1g027312m A0A067GJ09 PAC:18112451 Citrus sinensis 225  
orange1.1g028639m A0A067GTL9 PAC:18112452 Citrus sinensis 206  
orange1.1g031138m A0A067GG76 PAC:18105789 Citrus sinensis 165  
orange1.1g031131m A0A067GG76 PAC:18105788 Citrus sinensis 165  
orange1.1g003416m A0A067FFF8 PAC:18131926 Citrus sinensis 821  
orange1.1g006313m A0A067FIY0 PAC:18131927 Citrus sinensis 651  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            9397680
            11741548
            10647186
            15591044