Protein Domain : IPR006050

Type:  Domain Name:  DNA photolyase, N-terminal
Description:  The photolyase/cryptochrome family consists of flavoproteins that perform various functions using blue-light photons as an energie source. It is presentin all three domains of life, that is, archaea, eubacteria, and eukaryotes, and hence has arisen very early during evolution to protect genomes againstthe genotoxic effects of ultraviolet light originating from the sun. The photolyase/cryptochrome family is divided into two major groups: photolyasesand cryptochromes. Photolyases repair cytotoxic and mutagenic UV-induced photolesions in DNA in many species frombacteria to plants and animals by using a light-dependent repair mechanism. It involves light absorption, electron transfer from an excited reduced anddeprotanated FADH(-) to the flipped-out photolesion, followed by the fragmentation of the photolesions. Cryptochromes are highly related proteinsthat generally no longer repair damaged DNA, but function as photoreceptors. Cryptochromes regulate growth and development in plants and the circadianclock in animals [, , , , , , ].Both photolyases and cryptochromes have a bilobal architecture consisting of two domains: an N-terminal alpha/beta domain that may contain a light-harvesting chromophore to additionally broaden their activity spectra and a C- terminal alpha-helical catalytic domain comprising the light-sensitive FADcofactor. Diverse classes of antenna chromophores likes 5,10- methenyltetrahydrofolate (MTHF), 8-hydroxydeazaflavin, FMN or FAD have beenidentified in some photolyase/cryptochrome to broaden their activity spectra, whereas many others apparently lack any bound antenna chromophores.This entry represents the photolyase/cryptochrome alpha/beta domain. It adopts a dinucleotide binding fold with a five-stranded parallel beta sheet flanked on both sides by alpha helices [, ]. Short Name:  DNA_photolyase_N

0 Child Features

1 Contains

DB identifier Type Name
IPR014729 Domain Rossmann-like alpha/beta/alpha sandwich fold

3 Cross Referencess

Identifier
PF00875
PS51645
SSF52425

5 Found Ins

DB identifier Type Name
IPR002081 Family Cryptochrome/DNA photolyase, class 1
IPR014134 Family Cryptochrome, plant
IPR008148 Family DNA photolyase, class 2
IPR014133 Family Cryptochrome, DASH
IPR019947 Family Deoxyribodipyrimidine photo-lyase, 8-HDF type

0 GO Annotation

0 Ontology Annotations

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
92414 D8RF17 PAC:15418364 Selaginella moellendorffii 559  
96351 D8RLP2 PAC:15406949 Selaginella moellendorffii 510  
106065 D8S0Z3 PAC:15414906 Selaginella moellendorffii 499  
417535 D8S2S6 PAC:15404454 Selaginella moellendorffii 433  
230376 PAC:15413208 Selaginella moellendorffii 523  
85247 D8R6C0 PAC:15418453 Selaginella moellendorffii 345  
75166 D8QNP6 PAC:15410593 Selaginella moellendorffii 494  
426049 D8SV55 PAC:15404952 Selaginella moellendorffii 987  
evm.model.supercontig_10.218 PAC:16404580 Carica papaya 554  
evm.model.supercontig_244.8 PAC:16414600 Carica papaya 538  
evm.model.supercontig_29.82 PAC:16416294 Carica papaya 488  
evm.model.supercontig_3.293 PAC:16416583 Carica papaya 741  
evm.model.supercontig_36.135 PAC:16418321 Carica papaya 688  
evm.model.supercontig_44.63 PAC:16420204 Carica papaya 638  
evm.model.supercontig_9.257 PAC:16428154 Carica papaya 468  
29841.m002796 B9RV05 PAC:16810509 Ricinus communis 537  
29895.m000311 B9SZW0 PAC:16812382 Ricinus communis 640  
29908.m006032 PAC:16812855 Ricinus communis 690  
29986.m001623 B9SAS3 PAC:16815121 Ricinus communis 458  
30147.m014194 B9R9Q0 PAC:16820206 Ricinus communis 691  
30190.m011036 B9RBT7 PAC:16823398 Ricinus communis 489  
28226.m000847 B9SPQ7 PAC:16800382 Ricinus communis 578  
28226.m000846 B9SPQ6 PAC:16800381 Ricinus communis 576  
Cucsa.004710.1 PAC:16951046 Cucumis sativus 472  
Cucsa.115640.1 PAC:16960496 Cucumis sativus 679  
Cucsa.205530.1 A0A0A0K7T5 PAC:16969115 Cucumis sativus 451  
Cucsa.302320.1 Q9AVI6 PAC:16975741 Cucumis sativus 489  
Cucsa.302320.2 PAC:16975742 Cucumis sativus 465  
Cucsa.310860.2 PAC:16976594 Cucumis sativus 591  
Cucsa.310860.1 PAC:16976593 Cucumis sativus 591  

7 Publications

First Author Title Year Journal Volume Pages PubMed ID
            12535521
            19074258
            19570997
            22170053
            9487120
            21892138
            22325881