Gene : Medtr5g005470 M. truncatula Mt4.0v1
Defline:  (1 of 9) PTHR10535 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 Description:  DNA-directed RNA polymerase II
Genomic Order:  55 Name:  ? Medtr5g005470
Secondary Identifier:  ? PAC:31089250
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g005470 0.5kb upstream 0.5kb upstream 3950 true chr5: 464625-468574 Medicago truncatula
Medtr5g005470 0.5kb upstream 0.5kb upstream 500 false chr5: 464625-465124 Medicago truncatula
Medtr5g005470 0.5kb downstream 0.5kb downstream 3950 true chr5: 465125-469074 Medicago truncatula
Medtr5g005470 0.5kb downstream 0.5kb downstream 500 false chr5: 468575-469074 Medicago truncatula
Medtr5g005470 1.0kb upstream 1.0kb upstream 4450 true chr5: 464125-468574 Medicago truncatula
Medtr5g005470 1.0kb upstream 1.0kb upstream 1000 false chr5: 464125-465124 Medicago truncatula
Medtr5g005470 1.0kb downstream 1.0kb downstream 4450 true chr5: 465125-469574 Medicago truncatula
Medtr5g005470 1.0kb downstream 1.0kb downstream 1000 false chr5: 468575-469574 Medicago truncatula
Medtr5g005470 2.0kb upstream 2.0kb upstream 5450 true chr5: 463125-468574 Medicago truncatula
Medtr5g005470 2.0kb upstream 2.0kb upstream 2000 false chr5: 463125-465124 Medicago truncatula
Medtr5g005470 2.0kb downstream 2.0kb downstream 5450 true chr5: 465125-470574 Medicago truncatula
Medtr5g005470 2.0kb downstream 2.0kb downstream 2000 false chr5: 468575-470574 Medicago truncatula
Medtr5g005470 5.0kb upstream 5.0kb upstream 8450 true chr5: 460125-468574 Medicago truncatula
Medtr5g005470 5.0kb upstream 5.0kb upstream 5000 false chr5: 460125-465124 Medicago truncatula
Medtr5g005470 5.0kb downstream 5.0kb downstream 8450 true chr5: 465125-473574 Medicago truncatula
Medtr5g005470 5.0kb downstream 5.0kb downstream 5000 false chr5: 468575-473574 Medicago truncatula
Medtr5g005470 10.0kb upstream 10.0kb upstream 13450 true chr5: 455125-468574 Medicago truncatula
Medtr5g005470 10.0kb upstream 10.0kb upstream 10000 false chr5: 455125-465124 Medicago truncatula
Medtr5g005470 10.0kb downstream 10.0kb downstream 13450 true chr5: 465125-478574 Medicago truncatula
Medtr5g005470 10.0kb downstream 10.0kb downstream 10000 false chr5: 468575-478574 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314097 5265 Fabidae View MSA
124061501 5270 Rosid View MSA
123752021 5271 Pentapetalae View MSA
122793391 5272 Eudicot View MSA
122044572 5273 Angiosperm View MSA
121347059 5274 Embryophyte View MSA
123424632 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.225       Low
cufflinks 9.952     High  
cufflinks 10.525     High  
cufflinks 8.342        
cufflinks 12.833     High High
cufflinks 4.662       Low
cufflinks 8.944        
cufflinks 9.025     High  
cufflinks 9.997        

0 Strain