Gene : Medtr4g031680 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR23139//PTHR23139:SF61 - RNA-BINDING PROTEIN Description:  U2 snRNP auxilliary factor, large subunit, splicing factor
Genomic Order:  1394 Name:  ? Medtr4g031680
Secondary Identifier:  ? PAC:31109858
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g031680 0.5kb upstream 0.5kb upstream 7495 true chr4: 10770195-10777689 Medicago truncatula
Medtr4g031680 0.5kb upstream 0.5kb upstream 500 false chr4: 10777190-10777689 Medicago truncatula
Medtr4g031680 0.5kb downstream 0.5kb downstream 7495 true chr4: 10769695-10777189 Medicago truncatula
Medtr4g031680 0.5kb downstream 0.5kb downstream 500 false chr4: 10769695-10770194 Medicago truncatula
Medtr4g031680 1.0kb upstream 1.0kb upstream 7995 true chr4: 10770195-10778189 Medicago truncatula
Medtr4g031680 1.0kb upstream 1.0kb upstream 1000 false chr4: 10777190-10778189 Medicago truncatula
Medtr4g031680 1.0kb downstream 1.0kb downstream 7995 true chr4: 10769195-10777189 Medicago truncatula
Medtr4g031680 1.0kb downstream 1.0kb downstream 1000 false chr4: 10769195-10770194 Medicago truncatula
Medtr4g031680 2.0kb upstream 2.0kb upstream 8995 true chr4: 10770195-10779189 Medicago truncatula
Medtr4g031680 2.0kb upstream 2.0kb upstream 2000 false chr4: 10777190-10779189 Medicago truncatula
Medtr4g031680 2.0kb downstream 2.0kb downstream 8995 true chr4: 10768195-10777189 Medicago truncatula
Medtr4g031680 2.0kb downstream 2.0kb downstream 2000 false chr4: 10768195-10770194 Medicago truncatula
Medtr4g031680 5.0kb upstream 5.0kb upstream 11995 true chr4: 10770195-10782189 Medicago truncatula
Medtr4g031680 5.0kb upstream 5.0kb upstream 5000 false chr4: 10777190-10782189 Medicago truncatula
Medtr4g031680 5.0kb downstream 5.0kb downstream 11995 true chr4: 10765195-10777189 Medicago truncatula
Medtr4g031680 5.0kb downstream 5.0kb downstream 5000 false chr4: 10765195-10770194 Medicago truncatula
Medtr4g031680 10.0kb upstream 10.0kb upstream 16995 true chr4: 10770195-10787189 Medicago truncatula
Medtr4g031680 10.0kb upstream 10.0kb upstream 10000 false chr4: 10777190-10787189 Medicago truncatula
Medtr4g031680 10.0kb downstream 10.0kb downstream 16995 true chr4: 10760195-10777189 Medicago truncatula
Medtr4g031680 10.0kb downstream 10.0kb downstream 10000 false chr4: 10760195-10770194 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311878 5265 Fabidae View MSA
124065257 5270 Rosid View MSA
123749949 5271 Pentapetalae View MSA
122795253 5272 Eudicot View MSA
122050030 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349493 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.512       High
cufflinks 5.924        
cufflinks 6.774        
cufflinks 3.103        
cufflinks 7.012        
cufflinks 1.983       Low
cufflinks 3.176        
cufflinks 6.593        
cufflinks 3.599        

0 Strain