Gene : Glyma.04G141500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10535:SF5 - DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5C Genomic Order:  1415
Name:  ? Glyma.04G141500 Secondary Identifier:  ? PAC:30489947
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G141500 0.5kb upstream 0.5kb upstream 3390 true Chr04: 23838512-23841901 Glycine max
Glyma.04G141500 0.5kb upstream 0.5kb upstream 500 false Chr04: 23841402-23841901 Glycine max
Glyma.04G141500 0.5kb downstream 0.5kb downstream 3390 true Chr04: 23838012-23841401 Glycine max
Glyma.04G141500 0.5kb downstream 0.5kb downstream 500 false Chr04: 23838012-23838511 Glycine max
Glyma.04G141500 1.0kb upstream 1.0kb upstream 3890 true Chr04: 23838512-23842401 Glycine max
Glyma.04G141500 1.0kb upstream 1.0kb upstream 1000 false Chr04: 23841402-23842401 Glycine max
Glyma.04G141500 1.0kb downstream 1.0kb downstream 3890 true Chr04: 23837512-23841401 Glycine max
Glyma.04G141500 1.0kb downstream 1.0kb downstream 1000 false Chr04: 23837512-23838511 Glycine max
Glyma.04G141500 2.0kb upstream 2.0kb upstream 4890 true Chr04: 23838512-23843401 Glycine max
Glyma.04G141500 2.0kb upstream 2.0kb upstream 2000 false Chr04: 23841402-23843401 Glycine max
Glyma.04G141500 2.0kb downstream 2.0kb downstream 4890 true Chr04: 23836512-23841401 Glycine max
Glyma.04G141500 2.0kb downstream 2.0kb downstream 2000 false Chr04: 23836512-23838511 Glycine max
Glyma.04G141500 5.0kb upstream 5.0kb upstream 7890 true Chr04: 23838512-23846401 Glycine max
Glyma.04G141500 5.0kb upstream 5.0kb upstream 5000 false Chr04: 23841402-23846401 Glycine max
Glyma.04G141500 5.0kb downstream 5.0kb downstream 7890 true Chr04: 23833512-23841401 Glycine max
Glyma.04G141500 5.0kb downstream 5.0kb downstream 5000 false Chr04: 23833512-23838511 Glycine max
Glyma.04G141500 10.0kb upstream 10.0kb upstream 12890 true Chr04: 23838512-23851401 Glycine max
Glyma.04G141500 10.0kb upstream 10.0kb upstream 10000 false Chr04: 23841402-23851401 Glycine max
Glyma.04G141500 10.0kb downstream 10.0kb downstream 12890 true Chr04: 23828512-23841401 Glycine max
Glyma.04G141500 10.0kb downstream 10.0kb downstream 10000 false Chr04: 23828512-23838511 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122248825 5265 Fabidae Singleton cluster - no MSA
123992349 5270 Rosid Singleton cluster - no MSA
123752021 5271 Pentapetalae View MSA
122793391 5272 Eudicot View MSA
122044572 5273 Angiosperm View MSA
121347059 5274 Embryophyte View MSA
123424632 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low  

0 Strain