Gene : Glyma.16G084800 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR21297 - DNA-DIRECTED RNA POLYMERASE II Genomic Order:  848
Name:  ? Glyma.16G084800 Secondary Identifier:  ? PAC:30559588
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G084800 0.5kb upstream 0.5kb upstream 7067 true Chr16: 9951872-9958938 Glycine max
Glyma.16G084800 0.5kb upstream 0.5kb upstream 500 false Chr16: 9958439-9958938 Glycine max
Glyma.16G084800 0.5kb downstream 0.5kb downstream 7067 true Chr16: 9951372-9958438 Glycine max
Glyma.16G084800 0.5kb downstream 0.5kb downstream 500 false Chr16: 9951372-9951871 Glycine max
Glyma.16G084800 1.0kb upstream 1.0kb upstream 7567 true Chr16: 9951872-9959438 Glycine max
Glyma.16G084800 1.0kb upstream 1.0kb upstream 1000 false Chr16: 9958439-9959438 Glycine max
Glyma.16G084800 1.0kb downstream 1.0kb downstream 7567 true Chr16: 9950872-9958438 Glycine max
Glyma.16G084800 1.0kb downstream 1.0kb downstream 1000 false Chr16: 9950872-9951871 Glycine max
Glyma.16G084800 2.0kb upstream 2.0kb upstream 8567 true Chr16: 9951872-9960438 Glycine max
Glyma.16G084800 2.0kb upstream 2.0kb upstream 2000 false Chr16: 9958439-9960438 Glycine max
Glyma.16G084800 2.0kb downstream 2.0kb downstream 8567 true Chr16: 9949872-9958438 Glycine max
Glyma.16G084800 2.0kb downstream 2.0kb downstream 2000 false Chr16: 9949872-9951871 Glycine max
Glyma.16G084800 5.0kb upstream 5.0kb upstream 11567 true Chr16: 9951872-9963438 Glycine max
Glyma.16G084800 5.0kb upstream 5.0kb upstream 5000 false Chr16: 9958439-9963438 Glycine max
Glyma.16G084800 5.0kb downstream 5.0kb downstream 11567 true Chr16: 9946872-9958438 Glycine max
Glyma.16G084800 5.0kb downstream 5.0kb downstream 5000 false Chr16: 9946872-9951871 Glycine max
Glyma.16G084800 10.0kb upstream 10.0kb upstream 16567 true Chr16: 9951872-9968438 Glycine max
Glyma.16G084800 10.0kb upstream 10.0kb upstream 10000 false Chr16: 9958439-9968438 Glycine max
Glyma.16G084800 10.0kb downstream 10.0kb downstream 16567 true Chr16: 9941872-9958438 Glycine max
Glyma.16G084800 10.0kb downstream 10.0kb downstream 10000 false Chr16: 9941872-9951871 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305917 5265 Fabidae View MSA
124060840 5270 Rosid View MSA
123744062 5271 Pentapetalae View MSA
122792383 5272 Eudicot View MSA
122048092 5273 Angiosperm View MSA
123429036 5275 Viridiplantae View MSA
121349369 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.8066 0.0 36.5625   Low
cufflinks 21.6731 0.0 58.9191 High  
cufflinks 17.2742 0.0 47.7715    
cufflinks 15.9556 0.0 44.4433    
cufflinks 20.9802 0.0 57.2456 High  
cufflinks 28.6907 0.0 77.0366 High High
cufflinks 15.8788 0.0 44.4243    
cufflinks 26.4961 0.0 71.2604 High High
cufflinks 22.9808 0.0 62.2537 High  
cufflinks 1.681        
cufflinks 0.944       Low
cufflinks 1.663        
cufflinks 1.874        
cufflinks 2.233       High
cufflinks 1.451        
cufflinks 1.687        
cufflinks 1.245        
cufflinks 1.75        
cufflinks 1.722        
cufflinks 1.553        
cufflinks 1.229       Low
cufflinks 1.598        
cufflinks 1.879        
cufflinks 1.055       Low
cufflinks 1.819        
cufflinks 1.424        

0 Strain