Gene : Cagra.2342s0005 C. grandiflora v1.1
Defline:  (1 of 1) PTHR10459:SF38 - DNA LIGASE Genomic Order:  5
Name:  ? Cagra.2342s0005 Secondary Identifier:  ? PAC:28894360
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2342s0005 0.5kb upstream 0.5kb upstream 8360 true Scaffold2342: 21588-29947 Capsella grandiflora
Cagra.2342s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold2342: 29448-29947 Capsella grandiflora
Cagra.2342s0005 0.5kb downstream 0.5kb downstream 8360 true Scaffold2342: 21088-29447 Capsella grandiflora
Cagra.2342s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold2342: 21088-21587 Capsella grandiflora
Cagra.2342s0005 1.0kb upstream 1.0kb upstream 8860 true Scaffold2342: 21588-30447 Capsella grandiflora
Cagra.2342s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold2342: 29448-30447 Capsella grandiflora
Cagra.2342s0005 1.0kb downstream 1.0kb downstream 8860 true Scaffold2342: 20588-29447 Capsella grandiflora
Cagra.2342s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold2342: 20588-21587 Capsella grandiflora
Cagra.2342s0005 2.0kb upstream 2.0kb upstream 9860 true Scaffold2342: 21588-31447 Capsella grandiflora
Cagra.2342s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold2342: 29448-31447 Capsella grandiflora
Cagra.2342s0005 2.0kb downstream 2.0kb downstream 9860 true Scaffold2342: 19588-29447 Capsella grandiflora
Cagra.2342s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold2342: 19588-21587 Capsella grandiflora
Cagra.2342s0005 5.0kb upstream 5.0kb upstream 12317 true Scaffold2342: 21588-33904 Capsella grandiflora
Cagra.2342s0005 5.0kb upstream 5.0kb upstream 4457 false Scaffold2342: 29448-33904 Capsella grandiflora
Cagra.2342s0005 5.0kb downstream 5.0kb downstream 12860 true Scaffold2342: 16588-29447 Capsella grandiflora
Cagra.2342s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold2342: 16588-21587 Capsella grandiflora
Cagra.2342s0005 10.0kb upstream 10.0kb upstream 12317 true Scaffold2342: 21588-33904 Capsella grandiflora
Cagra.2342s0005 10.0kb upstream 10.0kb upstream 4457 false Scaffold2342: 29448-33904 Capsella grandiflora
Cagra.2342s0005 10.0kb downstream 10.0kb downstream 17860 true Scaffold2342: 11588-29447 Capsella grandiflora
Cagra.2342s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold2342: 11588-21587 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369536 5261 Brassicaceae View MSA
123833871 5264 Brassicales-Malvales View MSA
124339147 5266 SBM View MSA
124243523 5268 Malvidae View MSA
124063410 5270 Rosid View MSA
123738713 5271 Pentapetalae View MSA
122788649 5272 Eudicot View MSA
122046861 5273 Angiosperm View MSA
121351448 5274 Embryophyte View MSA
123426430 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain