Gene : Thecc1EG027093 T. cacao v1.1
Defline:  (1 of 10) PF00665//PF07727 - Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) Genomic Order:  165
Name:  ? Thecc1EG027093 Secondary Identifier:  ? PAC:27439248
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG027093 0.5kb upstream 0.5kb upstream 5534 true scaffold_6: 1357601-1363134 Theobroma cacao
Thecc1EG027093 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 1362635-1363134 Theobroma cacao
Thecc1EG027093 0.5kb downstream 0.5kb downstream 5534 true scaffold_6: 1357101-1362634 Theobroma cacao
Thecc1EG027093 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 1357101-1357600 Theobroma cacao
Thecc1EG027093 1.0kb upstream 1.0kb upstream 6034 true scaffold_6: 1357601-1363634 Theobroma cacao
Thecc1EG027093 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 1362635-1363634 Theobroma cacao
Thecc1EG027093 1.0kb downstream 1.0kb downstream 6034 true scaffold_6: 1356601-1362634 Theobroma cacao
Thecc1EG027093 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 1356601-1357600 Theobroma cacao
Thecc1EG027093 2.0kb upstream 2.0kb upstream 7034 true scaffold_6: 1357601-1364634 Theobroma cacao
Thecc1EG027093 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 1362635-1364634 Theobroma cacao
Thecc1EG027093 2.0kb downstream 2.0kb downstream 7034 true scaffold_6: 1355601-1362634 Theobroma cacao
Thecc1EG027093 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 1355601-1357600 Theobroma cacao
Thecc1EG027093 5.0kb upstream 5.0kb upstream 10034 true scaffold_6: 1357601-1367634 Theobroma cacao
Thecc1EG027093 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 1362635-1367634 Theobroma cacao
Thecc1EG027093 5.0kb downstream 5.0kb downstream 10034 true scaffold_6: 1352601-1362634 Theobroma cacao
Thecc1EG027093 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 1352601-1357600 Theobroma cacao
Thecc1EG027093 10.0kb upstream 10.0kb upstream 15034 true scaffold_6: 1357601-1372634 Theobroma cacao
Thecc1EG027093 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 1362635-1372634 Theobroma cacao
Thecc1EG027093 10.0kb downstream 10.0kb downstream 15034 true scaffold_6: 1347601-1362634 Theobroma cacao
Thecc1EG027093 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 1347601-1357600 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121782523 5273 Angiosperm View MSA
123821026 5264 Brassicales-Malvales Singleton cluster - no MSA
124317219 5266 SBM Singleton cluster - no MSA
124165974 5268 Malvidae Singleton cluster - no MSA
124041093 5270 Rosid View MSA
123753055 5271 Pentapetalae View MSA
122774934 5272 Eudicot View MSA
121054037 5274 Embryophyte View MSA
123094036 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain