Gene : Thecc1EG024409 T. cacao v1.1
Defline:  (1 of 1) K06443 - lycopene beta-cyclase (lcyB, crtL1, crtY) Genomic Order:  1431
Name:  ? Thecc1EG024409 Secondary Identifier:  ? PAC:27420828
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao CAROTENOID-PWY Theobroma cacao pathologic  
Tcacao PWY-5943 Theobroma cacao pathologic  
Tcacao PWY-5947 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG024409 0.5kb upstream 0.5kb upstream 3185 true scaffold_5: 25226631-25229815 Theobroma cacao
Thecc1EG024409 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 25229316-25229815 Theobroma cacao
Thecc1EG024409 0.5kb downstream 0.5kb downstream 3185 true scaffold_5: 25226131-25229315 Theobroma cacao
Thecc1EG024409 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 25226131-25226630 Theobroma cacao
Thecc1EG024409 1.0kb upstream 1.0kb upstream 3685 true scaffold_5: 25226631-25230315 Theobroma cacao
Thecc1EG024409 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 25229316-25230315 Theobroma cacao
Thecc1EG024409 1.0kb downstream 1.0kb downstream 3685 true scaffold_5: 25225631-25229315 Theobroma cacao
Thecc1EG024409 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 25225631-25226630 Theobroma cacao
Thecc1EG024409 2.0kb upstream 2.0kb upstream 4685 true scaffold_5: 25226631-25231315 Theobroma cacao
Thecc1EG024409 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 25229316-25231315 Theobroma cacao
Thecc1EG024409 2.0kb downstream 2.0kb downstream 4685 true scaffold_5: 25224631-25229315 Theobroma cacao
Thecc1EG024409 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 25224631-25226630 Theobroma cacao
Thecc1EG024409 5.0kb upstream 5.0kb upstream 7685 true scaffold_5: 25226631-25234315 Theobroma cacao
Thecc1EG024409 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 25229316-25234315 Theobroma cacao
Thecc1EG024409 5.0kb downstream 5.0kb downstream 7685 true scaffold_5: 25221631-25229315 Theobroma cacao
Thecc1EG024409 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 25221631-25226630 Theobroma cacao
Thecc1EG024409 10.0kb upstream 10.0kb upstream 12685 true scaffold_5: 25226631-25239315 Theobroma cacao
Thecc1EG024409 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 25229316-25239315 Theobroma cacao
Thecc1EG024409 10.0kb downstream 10.0kb downstream 12685 true scaffold_5: 25216631-25229315 Theobroma cacao
Thecc1EG024409 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 25216631-25226630 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123832829 5264 Brassicales-Malvales View MSA
124345045 5266 SBM View MSA
124240984 5268 Malvidae View MSA
124065821 5270 Rosid View MSA
123737595 5271 Pentapetalae View MSA
122786885 5272 Eudicot View MSA
122046204 5273 Angiosperm View MSA
121345644 5274 Embryophyte View MSA
123423874 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain