Gene : Thecc1EG011709 T. cacao v1.1
Defline:  (1 of 2) PTHR23012//PTHR23012:SF57 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED Genomic Order:  3444
Name:  ? Thecc1EG011709 Secondary Identifier:  ? PAC:27459971
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7511 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG011709 0.5kb upstream 0.5kb upstream 5101 true scaffold_2: 41381771-41386871 Theobroma cacao
Thecc1EG011709 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 41381771-41382270 Theobroma cacao
Thecc1EG011709 0.5kb downstream 0.5kb downstream 5101 true scaffold_2: 41382271-41387371 Theobroma cacao
Thecc1EG011709 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 41386872-41387371 Theobroma cacao
Thecc1EG011709 1.0kb upstream 1.0kb upstream 5601 true scaffold_2: 41381271-41386871 Theobroma cacao
Thecc1EG011709 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 41381271-41382270 Theobroma cacao
Thecc1EG011709 1.0kb downstream 1.0kb downstream 5601 true scaffold_2: 41382271-41387871 Theobroma cacao
Thecc1EG011709 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 41386872-41387871 Theobroma cacao
Thecc1EG011709 2.0kb upstream 2.0kb upstream 6601 true scaffold_2: 41380271-41386871 Theobroma cacao
Thecc1EG011709 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 41380271-41382270 Theobroma cacao
Thecc1EG011709 2.0kb downstream 2.0kb downstream 6601 true scaffold_2: 41382271-41388871 Theobroma cacao
Thecc1EG011709 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 41386872-41388871 Theobroma cacao
Thecc1EG011709 5.0kb upstream 5.0kb upstream 9601 true scaffold_2: 41377271-41386871 Theobroma cacao
Thecc1EG011709 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 41377271-41382270 Theobroma cacao
Thecc1EG011709 5.0kb downstream 5.0kb downstream 9601 true scaffold_2: 41382271-41391871 Theobroma cacao
Thecc1EG011709 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 41386872-41391871 Theobroma cacao
Thecc1EG011709 10.0kb upstream 10.0kb upstream 14601 true scaffold_2: 41372271-41386871 Theobroma cacao
Thecc1EG011709 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 41372271-41382270 Theobroma cacao
Thecc1EG011709 10.0kb downstream 10.0kb downstream 14601 true scaffold_2: 41382271-41396871 Theobroma cacao
Thecc1EG011709 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 41386872-41396871 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123835799 5264 Brassicales-Malvales View MSA
124347139 5266 SBM View MSA
124251215 5268 Malvidae View MSA
124070525 5270 Rosid View MSA
123751414 5271 Pentapetalae View MSA
122787187 5272 Eudicot View MSA
122048569 5273 Angiosperm View MSA
121311024 5274 Embryophyte View MSA
123428817 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain