Gene : Phvul.005G050000 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10252:SF48 - NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3-RELATED Genomic Order:  495
Name:  ? Phvul.005G050000 Secondary Identifier:  ? PAC:37153861
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G050000 0.5kb upstream 0.5kb upstream 3214 true Chr05: 5939793-5943006 Phaseolus vulgaris
Phvul.005G050000 0.5kb upstream 0.5kb upstream 500 false Chr05: 5939793-5940292 Phaseolus vulgaris
Phvul.005G050000 0.5kb downstream 0.5kb downstream 3214 true Chr05: 5940293-5943506 Phaseolus vulgaris
Phvul.005G050000 0.5kb downstream 0.5kb downstream 500 false Chr05: 5943007-5943506 Phaseolus vulgaris
Phvul.005G050000 1.0kb upstream 1.0kb upstream 3714 true Chr05: 5939293-5943006 Phaseolus vulgaris
Phvul.005G050000 1.0kb upstream 1.0kb upstream 1000 false Chr05: 5939293-5940292 Phaseolus vulgaris
Phvul.005G050000 1.0kb downstream 1.0kb downstream 3714 true Chr05: 5940293-5944006 Phaseolus vulgaris
Phvul.005G050000 1.0kb downstream 1.0kb downstream 1000 false Chr05: 5943007-5944006 Phaseolus vulgaris
Phvul.005G050000 2.0kb upstream 2.0kb upstream 4714 true Chr05: 5938293-5943006 Phaseolus vulgaris
Phvul.005G050000 2.0kb upstream 2.0kb upstream 2000 false Chr05: 5938293-5940292 Phaseolus vulgaris
Phvul.005G050000 2.0kb downstream 2.0kb downstream 4714 true Chr05: 5940293-5945006 Phaseolus vulgaris
Phvul.005G050000 2.0kb downstream 2.0kb downstream 2000 false Chr05: 5943007-5945006 Phaseolus vulgaris
Phvul.005G050000 5.0kb upstream 5.0kb upstream 7714 true Chr05: 5935293-5943006 Phaseolus vulgaris
Phvul.005G050000 5.0kb upstream 5.0kb upstream 5000 false Chr05: 5935293-5940292 Phaseolus vulgaris
Phvul.005G050000 5.0kb downstream 5.0kb downstream 7714 true Chr05: 5940293-5948006 Phaseolus vulgaris
Phvul.005G050000 5.0kb downstream 5.0kb downstream 5000 false Chr05: 5943007-5948006 Phaseolus vulgaris
Phvul.005G050000 10.0kb upstream 10.0kb upstream 12714 true Chr05: 5930293-5943006 Phaseolus vulgaris
Phvul.005G050000 10.0kb upstream 10.0kb upstream 10000 false Chr05: 5930293-5940292 Phaseolus vulgaris
Phvul.005G050000 10.0kb downstream 10.0kb downstream 12714 true Chr05: 5940293-5953006 Phaseolus vulgaris
Phvul.005G050000 10.0kb downstream 10.0kb downstream 10000 false Chr05: 5943007-5953006 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306382 5265 Fabidae View MSA
124067484 5270 Rosid View MSA
123752429 5271 Pentapetalae View MSA
122774553 5272 Eudicot View MSA
122049278 5273 Angiosperm View MSA
123429029 5275 Viridiplantae View MSA
121351220 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.1603 0.0 30.8649   Low
cufflinks 15.0736 0.0 40.5698    
cufflinks 8.70318 0.0 24.523   Low
cufflinks 17.2654 0.0 45.9354    
cufflinks 13.9996 0.0 38.0875    
cufflinks 16.287 0.0 43.5698    
cufflinks 17.499 0.0 46.4712    
cufflinks 14.7413 0.0 39.6265    
cufflinks 16.5956 0.0 44.1905    
cufflinks 11.6 0.0 32.0105    
cufflinks 19.3507 0.0 51.3042   High

0 Strain