Gene : Solyc01g106880.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) 2.1.1.193 - 16S rRNA (uracil(1498)-N(3))-methyltransferase / M(3)U(1498) specific methyltransferase Description:  Ribosomal RNA small subunit methyltransferase E (AHRD V1 ***- C6WZC1_FLAB3); contains Interpro domain(s) IPR006700 Ribosomal RNA small subunit methyltransferase E
Genomic Order:  3738 Name:  ? Solyc01g106880.2
Secondary Identifier:  ? PAC:36137499
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g106880.2 0.5kb upstream 0.5kb upstream 4790 true SL2.50ch01: 94594864-94599653 Solanum lycopersicum
Solyc01g106880.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 94594864-94595363 Solanum lycopersicum
Solyc01g106880.2 0.5kb downstream 0.5kb downstream 4790 true SL2.50ch01: 94595364-94600153 Solanum lycopersicum
Solyc01g106880.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 94599654-94600153 Solanum lycopersicum
Solyc01g106880.2 1.0kb upstream 1.0kb upstream 5290 true SL2.50ch01: 94594364-94599653 Solanum lycopersicum
Solyc01g106880.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 94594364-94595363 Solanum lycopersicum
Solyc01g106880.2 1.0kb downstream 1.0kb downstream 5290 true SL2.50ch01: 94595364-94600653 Solanum lycopersicum
Solyc01g106880.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 94599654-94600653 Solanum lycopersicum
Solyc01g106880.2 2.0kb upstream 2.0kb upstream 6290 true SL2.50ch01: 94593364-94599653 Solanum lycopersicum
Solyc01g106880.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 94593364-94595363 Solanum lycopersicum
Solyc01g106880.2 2.0kb downstream 2.0kb downstream 6290 true SL2.50ch01: 94595364-94601653 Solanum lycopersicum
Solyc01g106880.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 94599654-94601653 Solanum lycopersicum
Solyc01g106880.2 5.0kb upstream 5.0kb upstream 9290 true SL2.50ch01: 94590364-94599653 Solanum lycopersicum
Solyc01g106880.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 94590364-94595363 Solanum lycopersicum
Solyc01g106880.2 5.0kb downstream 5.0kb downstream 9290 true SL2.50ch01: 94595364-94604653 Solanum lycopersicum
Solyc01g106880.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 94599654-94604653 Solanum lycopersicum
Solyc01g106880.2 10.0kb upstream 10.0kb upstream 14290 true SL2.50ch01: 94585364-94599653 Solanum lycopersicum
Solyc01g106880.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 94585364-94595363 Solanum lycopersicum
Solyc01g106880.2 10.0kb downstream 10.0kb downstream 14290 true SL2.50ch01: 94595364-94609653 Solanum lycopersicum
Solyc01g106880.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 94599654-94609653 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121471292 5263 Asterids View MSA
123738955 5271 Pentapetalae View MSA
122790203 5272 Eudicot View MSA
122046212 5273 Angiosperm View MSA
121345498 5274 Embryophyte View MSA
123427980 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain