Protein Domain : IPR016656

Type:  Family Name:  Transcription initiation factor TFIIE, beta subunit
Description:  Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit () and the small beta (). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE [].The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow [].This group represents a transcription initiation factor TFIIE, beta subunit. Short Name:  TFIIE-bsu

0 Child Features

2 Contains

DB identifier Type Name
IPR011991 Domain Winged helix-turn-helix DNA-binding domain
IPR003166 Domain Transcription factor TFIIE beta subunit, DNA-binding domain

1 Cross References

Identifier
PIRSF016398

0 Found In

2 GO Annotations

GO Term Gene Name
GO:0006367 IPR016656
GO:0005673 IPR016656

2 Ontology Annotations

GO Term Gene Name
GO:0006367 IPR016656
GO:0005673 IPR016656

0 Parent Features

549 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
evm.model.supercontig_87.99 PAC:16427772 Carica papaya 296  
Cucsa.106900.1 A0A0A0KWU5 PAC:16959531 Cucumis sativus 277  
orange1.1g023362m A0A067EKH4 PAC:18130486 Citrus sinensis 283  
orange1.1g023373m A0A067EKH4 PAC:18130487 Citrus sinensis 283  
orange1.1g023379m A0A067EKH4 PAC:18130485 Citrus sinensis 283  
orange1.1g023374m A0A067EKH4 PAC:18130484 Citrus sinensis 283  
AT4G21010.1 Q9SUB3 PAC:19647038 Arabidopsis thaliana 275  
AT4G20330.1 Q9SUP3 PAC:19646018 Arabidopsis thaliana 286  
Thhalv10025894m V4MIW3 PAC:20192960 Eutrema salsugineum 291  
Thhalv10025896m V4MIW3 PAC:20192959 Eutrema salsugineum 291  
Ciclev10021540m V4TQ52 PAC:20809605 Citrus clementina 283  
Ciclev10021533m V4TQ52 PAC:20809606 Citrus clementina 283  
Potri.001G107500.2 B9GKK9 PAC:27044361 Populus trichocarpa 284  
Potri.001G107500.1 B9GKK9 PAC:27044360 Populus trichocarpa 284  
46310 I0Z8M7 PAC:27393207 Coccomyxa subellipsoidea C-169 285  
Araha.10984s0003.1.p PAC:28854593 Arabidopsis halleri 286  
Araha.12732s0025.1.p PAC:28837542 Arabidopsis halleri 285  
Cagra.4169s0003.2.p PAC:28906638 Capsella grandiflora 287  
Cagra.4169s0003.3.p PAC:28906639 Capsella grandiflora 287  
Cagra.4169s0003.1.p PAC:28906640 Capsella grandiflora 287  
Bostr.10689s0011.1.p PAC:30674680 Boechera stricta 286  
Medtr5g010620.3 G7KDE9 PAC:31090445 Medicago truncatula 270  
Medtr5g010620.1 G7KDE8 PAC:31090443 Medicago truncatula 302  
Medtr5g010620.2 G7KDE9 PAC:31090444 Medicago truncatula 270  
SapurV1A.0507s0080.1.p PAC:31422606 Salix purpurea 284  
Spipo8G0014100 PAC:31511076 Spirodela polyrhiza 289  
evm_27.model.AmTr_v1.0_scaffold00057.224 U5D3G0 PAC:31574369 Amborella trichopoda 310  
Traes_4AS_90C3255FC.1 PAC:31862141 Triticum aestivum 283  
Traes_4BL_6A7577791.2 PAC:31945641 Triticum aestivum 283  
Traes_4DL_E3CDAB32B.1 PAC:32011302 Triticum aestivum 283  

1 Publications

First Author Title Year Journal Volume Pages PubMed ID
            10716934