Protein Domain : IPR003166

Type:  Domain Name:  Transcription factor TFIIE beta subunit, DNA-binding domain
Description:  Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit () and the small beta (). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE [].The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow [].This entry represents the central core DNA-binding domain of the TFIIE beta subunit. Short Name:  TFIIE_bsu_DNA-bd

0 Child Features

0 Contains

2 Cross Referencess

Identifier
PF02186
PS51351

1 Found In

DB identifier Type Name
IPR016656 Family Transcription initiation factor TFIIE, beta subunit

1 GO Annotation

GO Term Gene Name
GO:0006367 IPR003166

1 Ontology Annotations

GO Term Gene Name
GO:0006367 IPR003166

0 Parent Features

851 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
107428 D8S339 PAC:15420692 Selaginella moellendorffii 300  
evm.model.supercontig_87.99 PAC:16427772 Carica papaya 296  
30190.m011168 B9RC71 PAC:16823526 Ricinus communis 282  
Cucsa.106900.1 A0A0A0KWU5 PAC:16959531 Cucumis sativus 277  
orange1.1g023362m A0A067EKH4 PAC:18130486 Citrus sinensis 283  
orange1.1g023373m A0A067EKH4 PAC:18130487 Citrus sinensis 283  
orange1.1g023379m A0A067EKH4 PAC:18130485 Citrus sinensis 283  
orange1.1g023374m A0A067EKH4 PAC:18130484 Citrus sinensis 283  
AT4G21010.1 Q9SUB3 PAC:19647038 Arabidopsis thaliana 275  
AT4G20330.1 Q9SUP3 PAC:19646018 Arabidopsis thaliana 286  
Thhalv10025894m V4MIW3 PAC:20192960 Eutrema salsugineum 291  
Thhalv10025896m V4MIW3 PAC:20192959 Eutrema salsugineum 291  
Ciclev10021540m V4TQ52 PAC:20809605 Citrus clementina 283  
Ciclev10021533m V4TQ52 PAC:20809606 Citrus clementina 283  
Lus10005100 PAC:23171488 Linum usitatissimum 275  
Lus10002233 PAC:23172029 Linum usitatissimum 287  
Lus10029563 PAC:23152148 Linum usitatissimum 287  
Potri.001G107500.2 B9GKK9 PAC:27044361 Populus trichocarpa 284  
Potri.001G107500.1 B9GKK9 PAC:27044360 Populus trichocarpa 284  
Gorai.004G209400.1 A0A0D2R872 PAC:26777308 Gossypium raimondii 283  
Gorai.004G209400.2 A0A0D2R872 PAC:26777309 Gossypium raimondii 283  
Gorai.007G022800.3 A0A0D2SCT1 PAC:26779554 Gossypium raimondii 206  
Gorai.007G022800.2 A0A0D2T7N2 PAC:26779553 Gossypium raimondii 283  
Gorai.007G022800.1 A0A0D2T7N2 PAC:26779552 Gossypium raimondii 283  
14806 A4RV59 PAC:27413134 Ostreococcus lucimarinus 296  
Thecc1EG016212t1 A0A061GCC5 PAC:27448462 Theobroma cacao 284  
Migut.J01798.1.p PAC:28940203 Mimulus guttatus 287  
Migut.A00798.1.p A0A022QTB4 PAC:28938755 Mimulus guttatus 285  
Migut.A00798.2.p A0A022QTB4 PAC:28938754 Mimulus guttatus 285  
Araha.10984s0003.1.p PAC:28854593 Arabidopsis halleri 286  

1 Publications

First Author Title Year Journal Volume Pages PubMed ID
            10716934