Gene : Tp57577_TGAC_v2_gene8161 T. pratense v2
Defline:  (1 of 3) PF07727//PF14223 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // gag-polypeptide of LTR copia-type (UBN2) Genomic Order:  2272
Name:  ? Tp57577_TGAC_v2_gene8161 Secondary Identifier:  ? PAC:35969706
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene8161 0.5kb upstream 0.5kb upstream 7595 true Tp57577_TGAC_v2_LG2: 21481538-21489132 Trifolium pratense
Tp57577_TGAC_v2_gene8161 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG2: 21481538-21482037 Trifolium pratense
Tp57577_TGAC_v2_gene8161 0.5kb downstream 0.5kb downstream 7595 true Tp57577_TGAC_v2_LG2: 21482038-21489632 Trifolium pratense
Tp57577_TGAC_v2_gene8161 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG2: 21489133-21489632 Trifolium pratense
Tp57577_TGAC_v2_gene8161 1.0kb upstream 1.0kb upstream 8095 true Tp57577_TGAC_v2_LG2: 21481038-21489132 Trifolium pratense
Tp57577_TGAC_v2_gene8161 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG2: 21481038-21482037 Trifolium pratense
Tp57577_TGAC_v2_gene8161 1.0kb downstream 1.0kb downstream 8095 true Tp57577_TGAC_v2_LG2: 21482038-21490132 Trifolium pratense
Tp57577_TGAC_v2_gene8161 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG2: 21489133-21490132 Trifolium pratense
Tp57577_TGAC_v2_gene8161 2.0kb upstream 2.0kb upstream 9095 true Tp57577_TGAC_v2_LG2: 21480038-21489132 Trifolium pratense
Tp57577_TGAC_v2_gene8161 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG2: 21480038-21482037 Trifolium pratense
Tp57577_TGAC_v2_gene8161 2.0kb downstream 2.0kb downstream 9095 true Tp57577_TGAC_v2_LG2: 21482038-21491132 Trifolium pratense
Tp57577_TGAC_v2_gene8161 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG2: 21489133-21491132 Trifolium pratense
Tp57577_TGAC_v2_gene8161 5.0kb upstream 5.0kb upstream 12095 true Tp57577_TGAC_v2_LG2: 21477038-21489132 Trifolium pratense
Tp57577_TGAC_v2_gene8161 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG2: 21477038-21482037 Trifolium pratense
Tp57577_TGAC_v2_gene8161 5.0kb downstream 5.0kb downstream 12095 true Tp57577_TGAC_v2_LG2: 21482038-21494132 Trifolium pratense
Tp57577_TGAC_v2_gene8161 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG2: 21489133-21494132 Trifolium pratense
Tp57577_TGAC_v2_gene8161 10.0kb upstream 10.0kb upstream 17095 true Tp57577_TGAC_v2_LG2: 21472038-21489132 Trifolium pratense
Tp57577_TGAC_v2_gene8161 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG2: 21472038-21482037 Trifolium pratense
Tp57577_TGAC_v2_gene8161 10.0kb downstream 10.0kb downstream 17095 true Tp57577_TGAC_v2_LG2: 21482038-21499132 Trifolium pratense
Tp57577_TGAC_v2_gene8161 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG2: 21489133-21499132 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121782523 5273 Angiosperm View MSA
122231448 5265 Fabidae View MSA
124041093 5270 Rosid View MSA
123753055 5271 Pentapetalae View MSA
122774934 5272 Eudicot View MSA
121054037 5274 Embryophyte View MSA
123094036 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain