Protein Domain : IPR003977

Type:  Family Name:  E3 ubiquitin-protein ligase parkin
Description:  Parkinson's disease (PD) is a common neurodegenerative disorder with complex clinical features and a poorly understood aetiology. PD is accompanied by aprogressive loss of dopamine-containing neurons in the substantia nigra, with patients suffering from rigidity, slowness of movement, tremour anddisturbances of balance. Autosomal recessive juvenile parkinsonism (AR-JP) is a rare form of familial PD mapped to chromosome 6 and linked strongly toa pair of markers. One of these markers has been cloned, yielding a sequence that encodes a protein, 465 amino acids long []. The protein sequence,named parkin, shows moderate similarity with ubiquitin at the N terminus and a ring-finger domain at the C terminus.In normal individuals, parkin binds to the E2 ubiquitin-conjugating human enzyme 8 (UbcH8) through the C-terminal ring-finger domain. In the presenceof UbcH8, parkin has ubiquitin-protein ligase activity and even catalyses its own ubiquitination. Furthermore, parkin appears to target the synaptic vesicle-associated protein CDCrel-1 for ubiquitination and thus promotes itsdegradation. The mutated forms of parkin implicated in AR-JP appear to be defective in terms of UbcH8 binding, E3 ubiquitin protein-ligase activity,self-ubiquitination, and CDCrel-1 binding and ubiquitination []. Short Name:  Parkin

0 Child Features

2 Contains

DB identifier Type Name
IPR000626 Domain Ubiquitin domain
IPR002867 Domain IBR domain

2 Cross Referencess

Identifier
PIRSF037880
PR01475

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0004842 IPR003977
GO:0005739 IPR003977
GO:0005829 IPR003977

3 Ontology Annotations

GO Term Gene Name
GO:0004842 IPR003977
GO:0005739 IPR003977
GO:0005829 IPR003977

1 Parent Features

DB identifier Type Name
IPR031127 Family E3 ubiquitin ligase RBR family

31 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
Gorai.013G163500.2 A0A0D2VG82 PAC:26787024 Gossypium raimondii 393  
Bradi1g67545.2.p A0A2K2DTV5 PAC:32803079 Brachypodium distachyon 132  
Aqcoe6G270600.1.p PAC:33061873 Aquilegia coerulea 237  
Brdisv1Koz-11011270m.p A0A2K2DTV5 PAC:33390590 Brachypodium distachyon Koz-1 132  
Brdisv1ABR6_r1011405m.p PAC:33669876 Brachypodium distachyon ABR6 132  
Brdisv1Bd2-31010116m.p A0A2K2DTV5 PAC:34438416 Brachypodium distachyon Bd2-3 132  
Brdisv1Arn11011328m.p A0A2K2DTV5 PAC:34524648 Brachypodium distachyon Arn1 132  
Brdisv1BdTR13C1009926m.p A0A2K2DTV5 PAC:34998434 Brachypodium distachyon BdTR13c 132  
Brdisv1BdTR13C1009927m.p PAC:34998435 Brachypodium distachyon BdTR13c 132  
Podel.17G037700.1.p PAC:37321471 Populus deltoides WV94 240  
BdiBd21-3.1G0909600.1.p PAC:38210252 Brachypodium distachyon Bd21-3 131  
HORVU2Hr1G104410.17 PAC:38372520 Hordeum vulgare 125  
HORVU2Hr1G104410.21 PAC:38372522 Hordeum vulgare 125  
HORVU2Hr1G104410.16 PAC:38372521 Hordeum vulgare 125  
HORVU2Hr1G104410.7 PAC:38372519 Hordeum vulgare 126  
Brahy.D01G0927100.1.p PAC:38613337 Brachypodium hybridum 132  
Brahy.S02G0128000.1.p PAC:38642745 Brachypodium hybridum 131  
Brasy2G147300.1.p PAC:40067274 Brachypodium sylvaticum 132  
Misin13G005400.1.p PAC:40514265 Miscanthus sinensis 374  
BdiBd21-3.1G0909600.1.p PAC:42954523 Brachypodium distachyon Bd21-3 132  
BdiBd1-1.1G811500.1.p A0A2K2DTV5 PAC:43461599 Brachypodium distachyon Bd1-1 132  
Bradi1g67545.2.p A0A2K2DTV5 PAC:43961643 Brachypodium distachyon 132  
ELECO.r07.2AG0112130.1 PAC:44180021 Eleusine coracana 161  
ELECO.r07.2BG0165530.1 PAC:44189843 Eleusine coracana 161  
Thupl.29377257s0005.1.p PAC:44955527 Thuja plicata 232  
Brame.07PG060300.1.p PAC:45274029 Brachypodium mexicanum 232  
Brame.02PG147400.1.p PAC:45189086 Brachypodium mexicanum 131  
Brame.02UG319500.1.p PAC:45201581 Brachypodium mexicanum 132  
Brame.02UG319500.2.p PAC:45201582 Brachypodium mexicanum 126  
maker-Fvb3-2-snap-gene-209.59-mRNA-1 PAC:50484144 Fragaria x ananassa 234  

2 Publications

First Author Title Year Journal Volume Pages PubMed ID
            10747911
            11078524