Gene : Lus10027278.g L. usitatissimum v1.0
Defline:  (1 of 2) PTHR13789:SF249 - LYCOPENE BETA CYCLASE, CHLOROPLASTIC Genomic Order:  136
Name:  ? Lus10027278.g Secondary Identifier:  ? PAC:23145559
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lusitatissimum CAROTENOID-PWY Linum usitatissimum pathologic  
Lusitatissimum PWY-5943 Linum usitatissimum pathologic  
Lusitatissimum PWY-5947 Linum usitatissimum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lus10027278.g 0.5kb upstream 0.5kb upstream 2024 true scaffold472: 601029-603052 Linum usitatissimum
Lus10027278.g 0.5kb upstream 0.5kb upstream 500 false scaffold472: 602553-603052 Linum usitatissimum
Lus10027278.g 0.5kb downstream 0.5kb downstream 2024 true scaffold472: 600529-602552 Linum usitatissimum
Lus10027278.g 0.5kb downstream 0.5kb downstream 500 false scaffold472: 600529-601028 Linum usitatissimum
Lus10027278.g 1.0kb upstream 1.0kb upstream 2524 true scaffold472: 601029-603552 Linum usitatissimum
Lus10027278.g 1.0kb upstream 1.0kb upstream 1000 false scaffold472: 602553-603552 Linum usitatissimum
Lus10027278.g 1.0kb downstream 1.0kb downstream 2524 true scaffold472: 600029-602552 Linum usitatissimum
Lus10027278.g 1.0kb downstream 1.0kb downstream 1000 false scaffold472: 600029-601028 Linum usitatissimum
Lus10027278.g 2.0kb upstream 2.0kb upstream 3524 true scaffold472: 601029-604552 Linum usitatissimum
Lus10027278.g 2.0kb upstream 2.0kb upstream 2000 false scaffold472: 602553-604552 Linum usitatissimum
Lus10027278.g 2.0kb downstream 2.0kb downstream 3524 true scaffold472: 599029-602552 Linum usitatissimum
Lus10027278.g 2.0kb downstream 2.0kb downstream 2000 false scaffold472: 599029-601028 Linum usitatissimum
Lus10027278.g 5.0kb upstream 5.0kb upstream 6524 true scaffold472: 601029-607552 Linum usitatissimum
Lus10027278.g 5.0kb upstream 5.0kb upstream 5000 false scaffold472: 602553-607552 Linum usitatissimum
Lus10027278.g 5.0kb downstream 5.0kb downstream 6524 true scaffold472: 596029-602552 Linum usitatissimum
Lus10027278.g 5.0kb downstream 5.0kb downstream 5000 false scaffold472: 596029-601028 Linum usitatissimum
Lus10027278.g 10.0kb upstream 10.0kb upstream 11524 true scaffold472: 601029-612552 Linum usitatissimum
Lus10027278.g 10.0kb upstream 10.0kb upstream 10000 false scaffold472: 602553-612552 Linum usitatissimum
Lus10027278.g 10.0kb downstream 10.0kb downstream 11524 true scaffold472: 591029-602552 Linum usitatissimum
Lus10027278.g 10.0kb downstream 10.0kb downstream 10000 false scaffold472: 591029-601028 Linum usitatissimum

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122449867 5262 Malpighiales View MSA
124240984 5268 Malvidae View MSA
124065821 5270 Rosid View MSA
123737595 5271 Pentapetalae View MSA
122786885 5272 Eudicot View MSA
122046204 5273 Angiosperm View MSA
121345644 5274 Embryophyte View MSA
123423874 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain