Protein Domain : IPR000477

Type:  Domain Name:  Reverse transcriptase domain
Description:  The use of an RNA template to produce DNA, for integration into the host genome and exploitation of a host cell, is a strategy employed in the replication of retroid elements, such as the retroviruses and bacterial retrons. The enzyme catalysing polymerisation is an RNA-directed DNA-polymerase, or reverse trancriptase (RT) (). Reverse transcriptase occurs in a variety of mobile elements, including retrotransposons, retroviruses, group II introns [], bacterial msDNAs, hepadnaviruses, and caulimoviruses.Retroviral reverse transcriptase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The discovery of retroelements in the prokaryotes raises intriguing questions concerning their roles in bacteria and the origin and evolution of reverse transcriptases and whether the bacterial reverse transcriptases are older than eukaryotic reverse transcriptases [].Several crystal structures of the reverse transcriptase (RT) domain have been determined []. Short Name:  RT_dom

0 Child Features

0 Contains

2 Cross Referencess

Identifier
PF00078
PS50878

3 Found Ins

DB identifier Type Name
IPR003545 Family Telomerase reverse transcriptase
IPR003286 Family RNA-directed DNA polymerase, eukaryota
IPR000123 Family RNA-directed DNA polymerase (reverse transcriptase), msDNA

0 GO Annotation

0 Ontology Annotations

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
415385 D8RVY6 PAC:15419643 Selaginella moellendorffii 206  
404971 D8QXY9 PAC:15414175 Selaginella moellendorffii 203  
419703 D8S9S6 PAC:15411903 Selaginella moellendorffii 464  
425101 D8SS09 PAC:15402697 Selaginella moellendorffii 484  
evm.TU.contig_31093.3 PAC:16429934 Carica papaya 87  
evm.TU.contig_32337.1 PAC:16430093 Carica papaya 155  
evm.TU.contig_41271.1 PAC:16431592 Carica papaya 204  
evm.model.supercontig_102.27 PAC:16404845 Carica papaya 265  
evm.model.supercontig_11.102 PAC:16405588 Carica papaya 110  
evm.model.supercontig_166.11 PAC:16410413 Carica papaya 295  
evm.model.supercontig_17.180 PAC:16410678 Carica papaya 202  
evm.model.supercontig_207.12 PAC:16413287 Carica papaya 177  
evm.model.supercontig_245.16 PAC:16414613 Carica papaya 315  
evm.model.supercontig_2745.2 PAC:16415780 Carica papaya 156  
evm.model.supercontig_5.175 PAC:16421279 Carica papaya 201  
evm.model.supercontig_50.135 PAC:16421594 Carica papaya 164  
evm.model.supercontig_59.43 PAC:16423181 Carica papaya 1046  
evm.model.supercontig_71.44 PAC:16425453 Carica papaya 135  
29693.m002023 B9S127 PAC:16805993 Ricinus communis 681  
29702.m000166 B9SZF9 PAC:16806151 Ricinus communis 120  
29804.m001501 B9RX29 PAC:16809119 Ricinus communis 1224  
30061.m000297 B9SLA2 PAC:16816349 Ricinus communis 366  
32989.m000014 B9TCG6 PAC:16825635 Ricinus communis 336  
35491.m000007 B9TCJ9 PAC:16826637 Ricinus communis 63  
48288.m000018 B9TAI8 PAC:16828077 Ricinus communis 220  
29628.m000772 B9SS16 PAC:16803915 Ricinus communis 732  
28098.m000128 B9T609 PAC:16799936 Ricinus communis 751  
27798.m000607 B9SPG6 PAC:16799223 Ricinus communis 715  
Cucsa.316790.1 PAC:16977119 Cucumis sativus 633  
Cucsa.321440.1 PAC:16977501 Cucumis sativus 215  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            8828137
            1377403
            12758069