Protein Domain : IPR002060

Type:  Family Name:  Squalene/phytoene synthase
Description:  Squalene synthase (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared bySQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene:2 FPP ->presqualene diphosphate + NADP ->squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP)into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP ->prephytoene diphosphate ->phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast. Short Name:  Squ/phyt_synthse

3 Child Features

DB identifier Type Name
IPR006449 Family Farnesyl-diphosphate farnesyltransferase
IPR017827 Family Squalene synthase HpnC
IPR017828 Family Squalene/phytoene synthase HpnD

2 Contains

DB identifier Type Name
IPR008949 Domain Isoprenoid synthase domain
IPR019845 Conserved_site Squalene/phytoene synthase, conserved site

1 Cross References

Identifier
PF00494

0 Found In

2 GO Annotations

GO Term Gene Name
GO:0016740 IPR002060
GO:0009058 IPR002060

2 Ontology Annotations

GO Term Gene Name
GO:0016740 IPR002060
GO:0009058 IPR002060

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
96714 D8RL70 PAC:15410033 Selaginella moellendorffii 392  
80277 D8QXA7 PAC:15403777 Selaginella moellendorffii 293  
233658 D8SCQ1 PAC:15401835 Selaginella moellendorffii 341  
evm.model.supercontig_119.76 PAC:16406596 Carica papaya 191  
evm.model.supercontig_150.32 PAC:16409486 Carica papaya 419  
evm.model.supercontig_150.33 PAC:16409487 Carica papaya 415  
evm.model.supercontig_150.34 PAC:16409488 Carica papaya 261  
evm.model.supercontig_29.104 PAC:16416127 Carica papaya 311  
29835.m000639 B9SM48 PAC:16810248 Ricinus communis 385  
29835.m000640 B9SM49 PAC:16810249 Ricinus communis 370  
30131.m007117 B9RHC3 PAC:16818940 Ricinus communis 412  
30190.m010993 B9RBP4 PAC:16823355 Ricinus communis 351  
28611.m000105 B9T406 PAC:16801242 Ricinus communis 428  
Cucsa.320570.1 PAC:16977365 Cucumis sativus 233  
Cucsa.109210.7 A0A0A0LIW1 PAC:16959818 Cucumis sativus 417  
Cucsa.109210.8 A0A0A0LIW1 PAC:16959819 Cucumis sativus 417  
Cucsa.109210.11 PAC:16959811 Cucumis sativus 410  
Cucsa.109210.12 PAC:16959812 Cucumis sativus 329  
Cucsa.109210.2 A0A0A0LIW1 PAC:16959813 Cucumis sativus 417  
Cucsa.109210.1 A0A0A0LIW1 PAC:16959809 Cucumis sativus 417  
Cucsa.153210.2 PAC:16964660 Cucumis sativus 257  
Cucsa.153210.1 PAC:16964659 Cucumis sativus 300  
Cucsa.173570.2 PAC:16966634 Cucumis sativus 266  
Cucsa.173570.1 A0A0A0KPV0 PAC:16966633 Cucumis sativus 421  
Cucsa.179860.1 A0A0A0KVC2 PAC:16967235 Cucumis sativus 388  
Cucsa.179860.2 PAC:16967236 Cucumis sativus 272  
orange1.1g016696m A0A067F6I9 PAC:18128407 Citrus sinensis 384  
orange1.1g044623m A0A067F1E1 PAC:18123242 Citrus sinensis 486  
orange1.1g019466m A0A067DQQ7 PAC:18110985 Citrus sinensis 340  
orange1.1g022601m A0A067DZ45 PAC:18110987 Citrus sinensis 294  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            8250898
            8294001
            8474436