Protein Domain : IPR006449

Type:  Family Name:  Farnesyl-diphosphate farnesyltransferase
Description:  This family of sequences describe farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologues lack the C-terminal predicted transmembrane region universally conserved among members of this family and therefore are not included in this group. These enzymes catalyse the formation of squalene by the reductive dimerisation of two farnesyl diphosphate molecules in a two-step reaction. This reaction occurs at the final branch point of the isoprenoid biosynthesis pathway, and is the first committed step in cholesterol biosynthesis.2 farnesyl diphosphate --->presqualene diphosphate --->squalene The human enzyme () is a membrane-bound monomer which folds as a single domain []. A large channel surrounded by five alpha helices runs through the centre of the protein. One end of this channel is exposed to solvent, while the other is completely enclosed and surrounded by hydrophobic residues. The two half reactions occur at different active sites in this channel. The first half reaction occurs at one end of the channel, then the intermediate is thought to move into the enclosed pocket where the second half reaction occurs. Short Name:  Squal_synth

0 Child Features

2 Contains

DB identifier Type Name
IPR008949 Domain Isoprenoid synthase domain
IPR019845 Conserved_site Squalene/phytoene synthase, conserved site

1 Cross References

Identifier
TIGR01559

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0004310 IPR006449
GO:0008610 IPR006449
GO:0016021 IPR006449

3 Ontology Annotations

GO Term Gene Name
GO:0004310 IPR006449
GO:0008610 IPR006449
GO:0016021 IPR006449

1 Parent Features

DB identifier Type Name
IPR002060 Family Squalene/phytoene synthase

832 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
96714 D8RL70 PAC:15410033 Selaginella moellendorffii 392  
evm.model.supercontig_150.32 PAC:16409486 Carica papaya 419  
evm.model.supercontig_150.33 PAC:16409487 Carica papaya 415  
30131.m007117 B9RHC3 PAC:16818940 Ricinus communis 412  
Cucsa.109210.7 A0A0A0LIW1 PAC:16959818 Cucumis sativus 417  
Cucsa.109210.8 A0A0A0LIW1 PAC:16959819 Cucumis sativus 417  
Cucsa.109210.11 PAC:16959811 Cucumis sativus 410  
Cucsa.109210.12 PAC:16959812 Cucumis sativus 329  
Cucsa.109210.2 A0A0A0LIW1 PAC:16959813 Cucumis sativus 417  
Cucsa.109210.1 A0A0A0LIW1 PAC:16959809 Cucumis sativus 417  
orange1.1g019466m A0A067DQQ7 PAC:18110985 Citrus sinensis 340  
orange1.1g022601m A0A067DZ45 PAC:18110987 Citrus sinensis 294  
orange1.1g022527m A0A067DQQ1 PAC:18110986 Citrus sinensis 295  
orange1.1g015087m A0A067DLL9 PAC:18110980 Citrus sinensis 413  
orange1.1g015108m A0A067DLL9 PAC:18110981 Citrus sinensis 413  
orange1.1g016607m A0A067DLM4 PAC:18110983 Citrus sinensis 386  
orange1.1g016621m A0A067DLM4 PAC:18110982 Citrus sinensis 386  
orange1.1g016722m A0A067DXZ8 PAC:18110984 Citrus sinensis 384  
AT4G34650.1 O65688 PAC:19647378 Arabidopsis thaliana 413  
AT4G34640.1 P53799 PAC:19643823 Arabidopsis thaliana 410  
Thhalv10025340m V4LST4 PAC:20193832 Eutrema salsugineum 409  
Thhalv10025338m V4LST4 PAC:20193831 Eutrema salsugineum 409  
Ciclev10028537m V4S8C8 PAC:20813179 Citrus clementina 413  
Ciclev10029066m V4UBN9 PAC:20813181 Citrus clementina 267  
Ciclev10028727m V4RQF7 PAC:20813180 Citrus clementina 356  
Lus10017499 PAC:23163155 Linum usitatissimum 413  
Lus10028786 PAC:23177336 Linum usitatissimum 413  
Potri.009G123100.1 B9HRH0 PAC:26986223 Populus trichocarpa 413  
Potri.004G161200.3 PAC:26990935 Populus trichocarpa 476  
Potri.004G161200.4 PAC:26990936 Populus trichocarpa 476  

1 Publications

First Author Title Year Journal Volume Pages PubMed ID
            10896663