Protein Domain : IPR007504

Type:  Family Name:  H/ACA ribonucleoprotein complex, subunit Gar1/Naf1
Description:  H/ACA ribonucleoprotein particles (RNPs) are a family of RNA pseudouridine synthases that specify modification sites through guide RNAs. More than 100 mammalian H/ACA RNAs form an equal number of ribonucleoproteins (RNPs) by associating with the same four core proteins: Cbf5, Gar1, Nhp2 and Nop10. The function of these H/ACA RNPs is essential for biogenesis of the ribosome, splicing of precursor mRNAs (pre-mRNAs), maintenance of telomeres and probably for additional cellular processes []. Recent crystal structures of archaeal H/ACA protein complexes show how the same four proteins accommodate >100 distinct but related H/ACA RNAs []. The complex contains a stable core composed of Cbf5 and Nop10, to which Gar1 and Nhp2 subsequently bind, the complex interacts with snoRNAs [].This entry represents Gar1 and Naf1. Naf1 is an RNA-binding protein required for the maturation of box H/ACA snoRNPs complex and ribosome biogenesis. During assembly of the H/ACA snoRNPs complex, it associates with the complex, disappearing during maturation of the complex being replaced by GAR1 to yield mature H/ACA snoRNPs complex. Naf1 reveals a striking structural homology with the core domain of archaeal Gar1 []. Short Name:  H/ACA_rnp_Gar1/Naf1

2 Child Features

DB identifier Type Name
IPR021154 Family H/ACA ribonucleoprotein complex, subunit Gar1
IPR020321 Family H/ACA ribonucleoprotein complex, subunit Gar1, archaea

0 Contains

1 Cross References

Identifier
PF04410

0 Found In

2 GO Annotations

GO Term Gene Name
GO:0001522 IPR007504
GO:0042254 IPR007504

2 Ontology Annotations

GO Term Gene Name
GO:0001522 IPR007504
GO:0042254 IPR007504

0 Parent Features

903 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
412557 D8RLV6 PAC:15412343 Selaginella moellendorffii 396  
266974 D8R5G8 PAC:15412234 Selaginella moellendorffii 191  
evm.model.supercontig_34.112 PAC:16417841 Carica papaya 768  
evm.model.supercontig_51.114 PAC:16421778 Carica papaya 158  
29950.m001133 B9SHF9 PAC:16814408 Ricinus communis 194  
29983.m003253 B9RW55 PAC:16815018 Ricinus communis 786  
Cucsa.318640.1 PAC:16977193 Cucumis sativus 634  
Cucsa.024070.1 A0A0A0KWF0 PAC:16951992 Cucumis sativus 194  
Cucsa.024070.2 PAC:16951993 Cucumis sativus 187  
Cucsa.024070.3 PAC:16951994 Cucumis sativus 187  
orange1.1g005475m A0A067E8L8 PAC:18094566 Citrus sinensis 695  
orange1.1g033397m A0A067EMB5 PAC:18116157 Citrus sinensis 120  
orange1.1g029223m A0A067EVR8 PAC:18116153 Citrus sinensis 197  
orange1.1g032119m A0A067EIY1 PAC:18116154 Citrus sinensis 147  
orange1.1g032083m A0A067EUZ0 PAC:18116155 Citrus sinensis 147  
orange1.1g032478m A0A067EIM8 PAC:18116156 Citrus sinensis 140  
AT5G18180.1 Q9FK53 PAC:19666495 Arabidopsis thaliana 189  
AT3G03920.1 Q8VZT0 PAC:19664572 Arabidopsis thaliana 202  
AT1G03530.1 Q9LR70 PAC:19652657 Arabidopsis thaliana 801  
Thhalv10024822m V4LZY4 PAC:20193021 Eutrema salsugineum 555  
Thhalv10021561m V4NSP4 PAC:20183752 Eutrema salsugineum 196  
Thhalv10014755m V4LPN9 PAC:20206145 Eutrema salsugineum 191  
Thhalv10006867m V4KYY2 PAC:20186165 Eutrema salsugineum 773  
Ciclev10014470m V4TJC8 PAC:20817289 Citrus clementina 695  
Lus10024956 PAC:23178988 Linum usitatissimum 569  
Lus10020289 PAC:23144068 Linum usitatissimum 194  
Lus10022870 PAC:23160037 Linum usitatissimum 777  
Potri.019G034900.2 PAC:27026896 Populus trichocarpa 176  
Potri.019G034900.1 A0A2K1WNY7 PAC:27026895 Populus trichocarpa 189  
Potri.013G058400.3 B9I5Y3 PAC:26993920 Populus trichocarpa 204  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            16943774
            16647858
            19917616
            17612558