Protein Domain : IPR007080

Type:  Domain Name:  RNA polymerase Rpb1, domain 1
Description:  RNA polymerases catalyse the DNA-dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). This domain, domain 1, represents the clamp domain, which is a mobile domain involved in positioning the DNA, maintenance of the transcription bubble and positioning of the nascent RNA strand [, ]. Short Name:  RNA_pol_Rpb1_1
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0 Child Features

0 Contains

1 Cross References

Identifier
PF04997

5 Found Ins

DB identifier Type Name
IPR015699 Family DNA-directed RNA pol I, largest subunit
IPR012754 Family DNA-directed RNA polymerase, subunit beta-prime
IPR015700 Family DNA-directed RNA polymerase III subunit RPC1
IPR012755 Family DNA-directed RNA polymerase, subunit gamma
IPR012758 Family DNA-directed RNA polymerase subunit A' (Rpo1N)

3 GO Annotations

GO Term Gene Name
GO:0003677 IPR007080
GO:0003899 IPR007080
GO:0006351 IPR007080

3 Ontology Annotations

GO Term Gene Name
GO:0003677 IPR007080
GO:0003899 IPR007080
GO:0006351 IPR007080

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
137771 D8TE68 PAC:15422279 Selaginella moellendorffii 713  
441655 D8RLP4 PAC:15409435 Selaginella moellendorffii 1438  
442419 D8RT89 PAC:15410797 Selaginella moellendorffii 1348  
438401 D8QXR6 PAC:15420992 Selaginella moellendorffii 1588  
110201 D8S773 PAC:15405805 Selaginella moellendorffii 1764  
evm.model.supercontig_6.315 PAC:16423504 Carica papaya 1348  
evm.model.supercontig_7.210 PAC:16425121 Carica papaya 1072  
evm.model.supercontig_92.7 PAC:16428642 Carica papaya 541  
29784.m000366 B9SXC0 PAC:16808469 Ricinus communis 1855  
30130.m000272 B9T0Q9 PAC:16818665 Ricinus communis 1383  
30131.m007197 B9RGA8 PAC:16819018 Ricinus communis 991  
30190.m011113 B9RC12 PAC:16823473 Ricinus communis 1475  
27810.m000650 B9SL65 PAC:16799255 Ricinus communis 1686  
Cucsa.336830.1 PAC:16978509 Cucumis sativus 1662  
Cucsa.330520.1 A0A0A0KN85 PAC:16978203 Cucumis sativus 1963  
Cucsa.322880.2 PAC:16977844 Cucumis sativus 1853  
Cucsa.322880.3 PAC:16977845 Cucumis sativus 1853  
Cucsa.322880.1 PAC:16977843 Cucumis sativus 1853  
Cucsa.041530.2 PAC:16952795 Cucumis sativus 808  
Cucsa.041530.1 PAC:16952794 Cucumis sativus 1467  
Cucsa.226950.1 PAC:16970003 Cucumis sativus 100  
Cucsa.226960.1 PAC:16970004 Cucumis sativus 149  
Cucsa.226970.1 PAC:16970005 Cucumis sativus 378  
orange1.1g045123m A0A067D0I1 PAC:18124054 Citrus sinensis 219  
orange1.1g000235m A0A067G7I3 PAC:18098882 Citrus sinensis 1815  
orange1.1g000525m PAC:18120487 Citrus sinensis 1443  
orange1.1g046825m PAC:18128003 Citrus sinensis 1208  
orange1.1g000882m PAC:18120101 Citrus sinensis 1238  
orange1.1g000291m PAC:18120100 Citrus sinensis 1714  
orange1.1g000829m A0A067GCD6 PAC:18097228 Citrus sinensis 1265  

2 Publications

First Author Title Year Journal Volume Pages PubMed ID
            8910400
            11313498