Protein Domain : IPR005822

Type:  Family Name:  Ribosomal protein L13
Description:  Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ].Ribosomal protein L13 is one of the proteins from the large ribosomal subunit []. In Escherichia coli, L13 is known to be one of the early assembly proteins of the 50S ribosomal subunit. Short Name:  Ribosomal_L13

2 Child Features

DB identifier Type Name
IPR005823 Family Ribosomal protein L13, bacterial-type
IPR005755 Family Ribosomal protein L13, eukaryotic/archaeal

0 Contains

4 Cross Referencess

Identifier
PTHR11545
PF00572
PIRSF002181
MF_01366

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0003735 IPR005822
GO:0006412 IPR005822
GO:0005840 IPR005822

3 Ontology Annotations

GO Term Gene Name
GO:0003735 IPR005822
GO:0006412 IPR005822
GO:0005840 IPR005822

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
7665 D8RFI3 PAC:15403742 Selaginella moellendorffii 132  
102594 D8RVH3 PAC:15406925 Selaginella moellendorffii 216  
417433 D8S274 PAC:15403716 Selaginella moellendorffii 410  
166650 D8QZG6 PAC:15417896 Selaginella moellendorffii 206  
91568 D8REC6 PAC:15416317 Selaginella moellendorffii 197  
evm.model.supercontig_130.7 PAC:16407977 Carica papaya 225  
evm.model.supercontig_138.3 PAC:16408464 Carica papaya 206  
evm.model.supercontig_60.98 PAC:16423793 Carica papaya 152  
evm.model.supercontig_63.27 PAC:16424115 Carica papaya 96  
evm.model.supercontig_77.57 PAC:16426115 Carica papaya 250  
evm.model.supercontig_8.153 PAC:16426434 Carica papaya 139  
evm.model.supercontig_8.152 PAC:16426433 Carica papaya 206  
29904.m002955 B9RWI8 PAC:16812600 Ricinus communis 206  
30128.m008930 B9RFL2 PAC:16818516 Ricinus communis 202  
30190.m010967 B9RBL9 PAC:16823330 Ricinus communis 202  
30204.m001760 B9S526 PAC:16823878 Ricinus communis 206  
28325.m000059 B9TAF5 PAC:16800632 Ricinus communis 63  
28304.m000173 B9T1K1 PAC:16800501 Ricinus communis 245  
Cucsa.101790.1 A0A0A0KL19 PAC:16958752 Cucumis sativus 204  
Cucsa.101790.2 A0A0A0KL19 PAC:16958753 Cucumis sativus 204  
Cucsa.143480.1 PAC:16963796 Cucumis sativus 206  
Cucsa.143480.2 PAC:16963797 Cucumis sativus 206  
Cucsa.143480.3 PAC:16963798 Cucumis sativus 182  
Cucsa.057950.1 A0A0A0KZG1 PAC:16954599 Cucumis sativus 248  
Cucsa.193870.1 PAC:16968107 Cucumis sativus 206  
Cucsa.256430.1 A0A0A0L439 PAC:16972538 Cucumis sativus 206  
orange1.1g028649m A0A067FEZ1 PAC:18131910 Citrus sinensis 206  
orange1.1g030330m A0A067FEU8 PAC:18131911 Citrus sinensis 179  
orange1.1g032954m A0A067FIF3 PAC:18131912 Citrus sinensis 130  
orange1.1g028623m A0A067FCM4 PAC:18135510 Citrus sinensis 206  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11297922
            11290319
            11114498
            8119894