Protein Domain : IPR005823

Type:  Family Name:  Ribosomal protein L13, bacterial-type
Description:  Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ].Ribosomal protein L13 is one of the proteins from the large ribosomal subunit []. In Escherichia coli, L13 is known to be one of the early assembly proteins of the 50S ribosomal subunit. This entry represents ribosomal protein L13 from bacteria, mitochondria and chloroplasts. Short Name:  Ribosomal_L13_bac-type

0 Child Features

0 Contains

1 Cross References

Identifier
TIGR01066

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0003735 IPR005823
GO:0006412 IPR005823
GO:0005840 IPR005823

3 Ontology Annotations

GO Term Gene Name
GO:0003735 IPR005823
GO:0006412 IPR005823
GO:0005840 IPR005823

1 Parent Features

DB identifier Type Name
IPR005822 Family Ribosomal protein L13

780 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
7665 D8RFI3 PAC:15403742 Selaginella moellendorffii 132  
91568 D8REC6 PAC:15416317 Selaginella moellendorffii 197  
evm.model.supercontig_130.7 PAC:16407977 Carica papaya 225  
evm.model.supercontig_77.57 PAC:16426115 Carica papaya 250  
30128.m008930 B9RFL2 PAC:16818516 Ricinus communis 202  
30190.m010967 B9RBL9 PAC:16823330 Ricinus communis 202  
28304.m000173 B9T1K1 PAC:16800501 Ricinus communis 245  
Cucsa.101790.1 A0A0A0KL19 PAC:16958752 Cucumis sativus 204  
Cucsa.101790.2 A0A0A0KL19 PAC:16958753 Cucumis sativus 204  
Cucsa.057950.1 A0A0A0KZG1 PAC:16954599 Cucumis sativus 248  
orange1.1g028533m A0A067EL78 PAC:18130215 Citrus sinensis 208  
orange1.1g030391m A0A067EXJ7 PAC:18130216 Citrus sinensis 178  
orange1.1g026067m A0A067EXJ2 PAC:18130212 Citrus sinensis 244  
orange1.1g027797m A0A067ELH2 PAC:18130214 Citrus sinensis 218  
orange1.1g026665m A0A067EPX6 PAC:18130213 Citrus sinensis 235  
orange1.1g028816m A0A067EP51 PAC:18139587 Citrus sinensis 203  
orange1.1g029588m A0A067EXH1 PAC:18139588 Citrus sinensis 191  
AT3G01790.1 Q7XA68 PAC:19661718 Arabidopsis thaliana 205  
AT3G01790.2 Q7XA68 PAC:19661719 Arabidopsis thaliana 205  
AT1G78630.1 Q9SYL9 PAC:19649971 Arabidopsis thaliana 241  
Thhalv10021543m V4NTI6 PAC:20182010 Eutrema salsugineum 203  
Thhalv10019066m V4K8A6 PAC:20191781 Eutrema salsugineum 240  
Ciclev10022004m V4TXW2 PAC:20808625 Citrus clementina 236  
Ciclev10021899m V4TMT5 PAC:20808624 Citrus clementina 245  
Ciclev10016830m V4U389 PAC:20817553 Citrus clementina 191  
Ciclev10016746m V4U8B9 PAC:20817552 Citrus clementina 203  
Ciclev10016751m V4U8B9 PAC:20817550 Citrus clementina 203  
Ciclev10016747m V4U8B9 PAC:20817551 Citrus clementina 203  
Lus10041940 PAC:23153495 Linum usitatissimum 261  
Lus10005553 PAC:23139636 Linum usitatissimum 260  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11297922
            11290319
            11114498
            8119894