Protein Domain : IPR005755

Type:  Family Name:  Ribosomal protein L13, eukaryotic/archaeal
Description:  Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ].Ribosomal protein L13 is one of the proteins from the large ribosomal subunit []. In Escherichia coli, L13 is known to be one of the early assembly proteins of the 50S ribosomal subunit. This model represents ribosomal protein of L13 from the Archaea and from the eukaryotic cytosol. Short Name:  Ribosomal_L13_euk/arc

0 Child Features

0 Contains

2 Cross Referencess

Identifier
PTHR11545:SF3
TIGR01077

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0003735 IPR005755
GO:0006412 IPR005755
GO:0015934 IPR005755

3 Ontology Annotations

GO Term Gene Name
GO:0003735 IPR005755
GO:0006412 IPR005755
GO:0015934 IPR005755

1 Parent Features

DB identifier Type Name
IPR005822 Family Ribosomal protein L13

898 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
102594 D8RVH3 PAC:15406925 Selaginella moellendorffii 216  
417433 D8S274 PAC:15403716 Selaginella moellendorffii 410  
166650 D8QZG6 PAC:15417896 Selaginella moellendorffii 206  
evm.model.supercontig_138.3 PAC:16408464 Carica papaya 206  
evm.model.supercontig_60.98 PAC:16423793 Carica papaya 152  
evm.model.supercontig_8.153 PAC:16426434 Carica papaya 139  
evm.model.supercontig_8.152 PAC:16426433 Carica papaya 206  
29904.m002955 B9RWI8 PAC:16812600 Ricinus communis 206  
30204.m001760 B9S526 PAC:16823878 Ricinus communis 206  
Cucsa.143480.1 PAC:16963796 Cucumis sativus 206  
Cucsa.143480.2 PAC:16963797 Cucumis sativus 206  
Cucsa.143480.3 PAC:16963798 Cucumis sativus 182  
Cucsa.193870.1 PAC:16968107 Cucumis sativus 206  
Cucsa.256430.1 A0A0A0L439 PAC:16972538 Cucumis sativus 206  
orange1.1g028649m A0A067FEZ1 PAC:18131910 Citrus sinensis 206  
orange1.1g030330m A0A067FEU8 PAC:18131911 Citrus sinensis 179  
orange1.1g032954m A0A067FIF3 PAC:18131912 Citrus sinensis 130  
orange1.1g028623m A0A067FCM4 PAC:18135510 Citrus sinensis 206  
orange1.1g028707m A0A067FDB5 PAC:18135511 Citrus sinensis 205  
AT4G13170.1 Q9SVR0 PAC:19648620 Arabidopsis thaliana 206  
AT5G48760.1 Q9FKC0 PAC:19667744 Arabidopsis thaliana 206  
AT5G48760.2 Q9FKC0 PAC:19667745 Arabidopsis thaliana 206  
AT3G24830.1 Q9LRX8 PAC:19664819 Arabidopsis thaliana 206  
AT3G07110.2 F4JD96 PAC:19662309 Arabidopsis thaliana 207  
AT3G07110.1 Q9SFU1 PAC:19662310 Arabidopsis thaliana 206  
Thhalv10021532m V4NRN2 PAC:20182544 Eutrema salsugineum 206  
Thhalv10002667m V4MXE8 PAC:20196769 Eutrema salsugineum 206  
Thhalv10004924m V4K4C9 PAC:20200124 Eutrema salsugineum 206  
Ciclev10023466m V4TTQ1 PAC:20809809 Citrus clementina 382  
Ciclev10005900m V4U4M4 PAC:20790899 Citrus clementina 206  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11297922
            11290319
            11114498
            8119894