Protein Domain : IPR006592

Type:  Domain Name:  RNA polymerase, N-terminal
Description:  The task of transcribing nuclear genes is shared between three RNA polymerases in eukaryotes: RNA polymerase (pol) I synthesizes the large rRNA, pol II synthesizes mRNA and pol III synthesizes tRNA and 5S rRNA []. Pol I transcription is localised to discrete sites called nucleoli; these can be likened to ribosomefactories, in which rRNA is synthesised by pol I in the fibrillar centres and then processed and assembled into ribosomes in the surrounding granular regions []. Prokaryotes, in contrast, posses a single RNA polymerase, with transcription being controlled by the particular signam factor interacting with the catalytic core.This entry describes an N-terminal conserved region which can be found in the largest subunits of prokaryoptic and eukaryotic RNA polymerases. Short Name:  RNA_pol_N

0 Child Features

1 Contains

DB identifier Type Name
IPR000722 Domain RNA polymerase, alpha subunit

1 Cross References

Identifier
SM00663

5 Found Ins

DB identifier Type Name
IPR015699 Family DNA-directed RNA pol I, largest subunit
IPR012754 Family DNA-directed RNA polymerase, subunit beta-prime
IPR015700 Family DNA-directed RNA polymerase III subunit RPC1
IPR012755 Family DNA-directed RNA polymerase, subunit gamma
IPR012758 Family DNA-directed RNA polymerase subunit A' (Rpo1N)

3 GO Annotations

GO Term Gene Name
GO:0003677 IPR006592
GO:0003899 IPR006592
GO:0006351 IPR006592

3 Ontology Annotations

GO Term Gene Name
GO:0003677 IPR006592
GO:0003899 IPR006592
GO:0006351 IPR006592

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
137771 D8TE68 PAC:15422279 Selaginella moellendorffii 713  
441655 D8RLP4 PAC:15409435 Selaginella moellendorffii 1438  
442419 D8RT89 PAC:15410797 Selaginella moellendorffii 1348  
438401 D8QXR6 PAC:15420992 Selaginella moellendorffii 1588  
110201 D8S773 PAC:15405805 Selaginella moellendorffii 1764  
90820 D8RCH5 PAC:15415625 Selaginella moellendorffii 510  
evm.model.supercontig_271.2 PAC:16415740 Carica papaya 918  
evm.model.supercontig_29.14 PAC:16416166 Carica papaya 662  
evm.model.supercontig_6.315 PAC:16423504 Carica papaya 1348  
evm.model.supercontig_7.210 PAC:16425121 Carica papaya 1072  
evm.model.supercontig_92.6 PAC:16428631 Carica papaya 938  
29784.m000366 B9SXC0 PAC:16808469 Ricinus communis 1855  
30130.m000272 B9T0Q9 PAC:16818665 Ricinus communis 1383  
30131.m007197 B9RGA8 PAC:16819018 Ricinus communis 991  
30185.m000926 B9S1B4 PAC:16823030 Ricinus communis 349  
30190.m011113 B9RC12 PAC:16823473 Ricinus communis 1475  
51325.m000005 B9TPV7 PAC:16828383 Ricinus communis 178  
27810.m000650 B9SL65 PAC:16799255 Ricinus communis 1686  
Cucsa.336830.1 PAC:16978509 Cucumis sativus 1662  
Cucsa.330520.1 A0A0A0KN85 PAC:16978203 Cucumis sativus 1963  
Cucsa.322880.2 PAC:16977844 Cucumis sativus 1853  
Cucsa.322880.3 PAC:16977845 Cucumis sativus 1853  
Cucsa.322880.1 PAC:16977843 Cucumis sativus 1853  
Cucsa.041530.2 PAC:16952795 Cucumis sativus 808  
Cucsa.041530.1 PAC:16952794 Cucumis sativus 1467  
Cucsa.226970.1 PAC:16970005 Cucumis sativus 378  
orange1.1g000235m A0A067G7I3 PAC:18098882 Citrus sinensis 1815  
orange1.1g000525m PAC:18120487 Citrus sinensis 1443  
orange1.1g046825m PAC:18128003 Citrus sinensis 1208  
orange1.1g000882m PAC:18120101 Citrus sinensis 1238  

2 Publications

First Author Title Year Journal Volume Pages PubMed ID
            10684922
            8689574