Protein Domain : IPR007081

Type:  Domain Name:  RNA polymerase Rpb1, domain 5
Description:  RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). This domain, domain 5, represents the discontinuous cleft domain that is required to form the central cleft or channel where the DNA is bound [, ]. Short Name:  RNA_pol_Rpb1_5
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0 Child Features

2 Contains

DB identifier Type Name
IPR007073 Domain RNA polymerase Rpb1, domain 7
IPR007075 Domain RNA polymerase Rpb1, domain 6

1 Cross References

Identifier
PF04998

5 Found Ins

DB identifier Type Name
IPR015699 Family DNA-directed RNA pol I, largest subunit
IPR012756 Family DNA-directed RNA polymerase, subunit beta''
IPR012754 Family DNA-directed RNA polymerase, subunit beta-prime
IPR015700 Family DNA-directed RNA polymerase III subunit RPC1
IPR012757 Family DNA-directed RNA polymerase subunit A''

3 GO Annotations

GO Term Gene Name
GO:0003677 IPR007081
GO:0003899 IPR007081
GO:0006351 IPR007081

3 Ontology Annotations

GO Term Gene Name
GO:0003677 IPR007081
GO:0003899 IPR007081
GO:0006351 IPR007081

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
137828 C7B2E5 PAC:15422915 Selaginella moellendorffii 1499  
441655 D8RLP4 PAC:15409435 Selaginella moellendorffii 1438  
442173 D8RRC2 PAC:15408520 Selaginella moellendorffii 574  
442419 D8RT89 PAC:15410797 Selaginella moellendorffii 1348  
438401 D8QXR6 PAC:15420992 Selaginella moellendorffii 1588  
110201 D8S773 PAC:15405805 Selaginella moellendorffii 1764  
90820 D8RCH5 PAC:15415625 Selaginella moellendorffii 510  
evm.model.supercontig_271.2 PAC:16415740 Carica papaya 918  
evm.model.supercontig_6.315 PAC:16423504 Carica papaya 1348  
evm.model.supercontig_7.210 PAC:16425121 Carica papaya 1072  
evm.model.supercontig_7.208 PAC:16425118 Carica papaya 371  
evm.model.supercontig_92.5 PAC:16428620 Carica papaya 268  
evm.model.supercontig_92.6 PAC:16428631 Carica papaya 938  
29784.m000366 B9SXC0 PAC:16808469 Ricinus communis 1855  
29852.m001989 B9RL06 PAC:16811551 Ricinus communis 238  
29923.m000786 B9SD12 PAC:16813642 Ricinus communis 360  
30130.m000272 B9T0Q9 PAC:16818665 Ricinus communis 1383  
30131.m007197 B9RGA8 PAC:16819018 Ricinus communis 991  
30190.m011113 B9RC12 PAC:16823473 Ricinus communis 1475  
58264.m00002 B9TL23 PAC:16829137 Ricinus communis 61  
29174.m000010 B9T8I6 PAC:16802426 Ricinus communis 384  
27810.m000650 B9SL65 PAC:16799255 Ricinus communis 1686  
Cucsa.336830.1 PAC:16978509 Cucumis sativus 1662  
Cucsa.330520.1 A0A0A0KN85 PAC:16978203 Cucumis sativus 1963  
Cucsa.322880.2 PAC:16977844 Cucumis sativus 1853  
Cucsa.322880.3 PAC:16977845 Cucumis sativus 1853  
Cucsa.322880.1 PAC:16977843 Cucumis sativus 1853  
Cucsa.226980.1 PAC:16970006 Cucumis sativus 444  
Cucsa.227000.1 PAC:16970008 Cucumis sativus 162  
orange1.1g000235m A0A067G7I3 PAC:18098882 Citrus sinensis 1815  

2 Publications

First Author Title Year Journal Volume Pages PubMed ID
            8910400
            11313498