Protein Domain : IPR007066

Type:  Domain Name:  RNA polymerase Rpb1, domain 3
Description:  RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). This domain, domain 3, represents the pore domain. The 3' end of RNA is positioned close to this domain. The pore delimited by this domain is thought to act as a channel through which nucleotides enter the active site and/or where the 3' end of the RNA may be extruded during back-tracking [, ]. Short Name:  RNA_pol_Rpb1_3
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0 Child Features

0 Contains

1 Cross References

Identifier
PF04983

6 Found Ins

DB identifier Type Name
IPR015699 Family DNA-directed RNA pol I, largest subunit
IPR012756 Family DNA-directed RNA polymerase, subunit beta''
IPR012754 Family DNA-directed RNA polymerase, subunit beta-prime
IPR015700 Family DNA-directed RNA polymerase III subunit RPC1
IPR012755 Family DNA-directed RNA polymerase, subunit gamma
IPR012758 Family DNA-directed RNA polymerase subunit A' (Rpo1N)

3 GO Annotations

GO Term Gene Name
GO:0003677 IPR007066
GO:0003899 IPR007066
GO:0006351 IPR007066

3 Ontology Annotations

GO Term Gene Name
GO:0003677 IPR007066
GO:0003899 IPR007066
GO:0006351 IPR007066

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
441655 D8RLP4 PAC:15409435 Selaginella moellendorffii 1438  
442419 D8RT89 PAC:15410797 Selaginella moellendorffii 1348  
438401 D8QXR6 PAC:15420992 Selaginella moellendorffii 1588  
110201 D8S773 PAC:15405805 Selaginella moellendorffii 1764  
90820 D8RCH5 PAC:15415625 Selaginella moellendorffii 510  
evm.model.supercontig_271.2 PAC:16415740 Carica papaya 918  
evm.model.supercontig_29.14 PAC:16416166 Carica papaya 662  
evm.model.supercontig_6.315 PAC:16423504 Carica papaya 1348  
evm.model.supercontig_7.210 PAC:16425121 Carica papaya 1072  
evm.model.supercontig_92.6 PAC:16428631 Carica papaya 938  
29784.m000366 B9SXC0 PAC:16808469 Ricinus communis 1855  
29852.m001989 B9RL06 PAC:16811551 Ricinus communis 238  
30130.m000272 B9T0Q9 PAC:16818665 Ricinus communis 1383  
30131.m007197 B9RGA8 PAC:16819018 Ricinus communis 991  
30185.m000926 B9S1B4 PAC:16823030 Ricinus communis 349  
30190.m011113 B9RC12 PAC:16823473 Ricinus communis 1475  
51325.m000005 B9TPV7 PAC:16828383 Ricinus communis 178  
27810.m000650 B9SL65 PAC:16799255 Ricinus communis 1686  
Cucsa.336830.1 PAC:16978509 Cucumis sativus 1662  
Cucsa.330520.1 A0A0A0KN85 PAC:16978203 Cucumis sativus 1963  
Cucsa.322880.2 PAC:16977844 Cucumis sativus 1853  
Cucsa.322880.3 PAC:16977845 Cucumis sativus 1853  
Cucsa.322880.1 PAC:16977843 Cucumis sativus 1853  
Cucsa.041530.2 PAC:16952795 Cucumis sativus 808  
Cucsa.041530.1 PAC:16952794 Cucumis sativus 1467  
Cucsa.226970.1 PAC:16970005 Cucumis sativus 378  
orange1.1g000235m A0A067G7I3 PAC:18098882 Citrus sinensis 1815  
orange1.1g000525m PAC:18120487 Citrus sinensis 1443  
orange1.1g046825m PAC:18128003 Citrus sinensis 1208  
orange1.1g000882m PAC:18120101 Citrus sinensis 1238  

2 Publications

First Author Title Year Journal Volume Pages PubMed ID
            8910400
            11313498