Protein Domain : IPR002792

Type:  Domain Name:  TRAM domain
Description:  The TRAM (after TRM2 and miaB) domain is a 60-70-residue-long module that is found in: Two distinct classes of tRNA-modifying enzymes, namely uridine methylases of the TRM2 family and enzymes of the miaB family that are involved in 2- methylthioadenine formationIn several other proteins associated with the translation machineryIn a family of small uncharacterised archaeal proteins that are predicted to have a role in the regulation of tRNA modification and/or translationThe TRAM domain can be found alone or in association with other domains, such as the catalytic biotin/lipoate synthetase-like domain, the RNA methylase domain, the ribosomal S2 domain and the eIF2-beta domain. The TRAM domain is predicted to bind tRNA and deliver the RNA-modifying enzymatic domain to their targets [].Secondary structure prediction indicates that the TRAM domain adopts a simple beta-barrel fold. The conservation pattern of the TRAM domain consists primarily of small and hydrophobic residues that correspond to five beta-strands in the predicted secondary structure []. Short Name:  TRAM_dom

0 Child Features

0 Contains

2 Cross Referencess

Identifier
PF01938
PS50926

2 Found Ins

DB identifier Type Name
IPR001566 Family 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
IPR005839 Family Methylthiotransferase

0 GO Annotation

0 Ontology Annotations

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
31574 D8RF06 PAC:15417785 Selaginella moellendorffii 421  
180500 D8SKD9 PAC:15414005 Selaginella moellendorffii 469  
170457 D8RD96 PAC:15405991 Selaginella moellendorffii 536  
evm.model.supercontig_131.16 PAC:16408008 Carica papaya 278  
evm.model.supercontig_6.187 PAC:16423361 Carica papaya 405  
evm.model.supercontig_66.10 PAC:16424542 Carica papaya 634  
29970.m000984 B9SG04 PAC:16814675 Ricinus communis 785  
30074.m001410 B9S747 PAC:16816971 Ricinus communis 630  
30146.m003439 B9RQ77 PAC:16819561 Ricinus communis 577  
29634.m002060 B9S686 PAC:16804201 Ricinus communis 535  
Cucsa.184640.1 PAC:16967583 Cucumis sativus 521  
Cucsa.061610.1 PAC:16954908 Cucumis sativus 635  
Cucsa.360750.1 A0A0A0KB04 PAC:16980801 Cucumis sativus 562  
Cucsa.360750.2 PAC:16980802 Cucumis sativus 493  
Cucsa.360750.3 PAC:16980803 Cucumis sativus 432  
orange1.1g038639m PAC:18103746 Citrus sinensis 229  
orange1.1g006956m A0A067GWL8 PAC:18091348 Citrus sinensis 624  
orange1.1g006836m A0A067GZA4 PAC:18091347 Citrus sinensis 629  
orange1.1g007001m A0A067GWA9 PAC:18091349 Citrus sinensis 622  
orange1.1g010162m A0A067H8T6 PAC:18091350 Citrus sinensis 516  
AT4G36390.1 Q8H0V1 PAC:19645627 Arabidopsis thaliana 640  
AT3G21300.1 Q9LU28 PAC:19660768 Arabidopsis thaliana 554  
AT1G72090.1 Q9C7H2 PAC:19658225 Arabidopsis thaliana 601  
Thhalv10024669m V4P269 PAC:20193657 Eutrema salsugineum 632  
Thhalv10020447m V4LV75 PAC:20183506 Eutrema salsugineum 549  
Thhalv10000077m V4M2D4 PAC:20208263 Eutrema salsugineum 647  
Thhalv10018307m V4KAB8 PAC:20192110 Eutrema salsugineum 603  
Ciclev10000888m V4T416 PAC:20785912 Citrus clementina 516  
Ciclev10000582m V4V758 PAC:20785911 Citrus clementina 629  
Ciclev10026963m V4SP27 PAC:20799358 Citrus clementina 610  

1 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11313137