Protein Domain : IPR001566

Type:  Family Name:  23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Description:  This family represents the RlmD (also known as rumA / ygcA) RNA uridine methyltransferase. In E. coli, methyltransferases are responsible for converting uridine to thymidine in rRNA and tRNAs. Among them, TrmA is responsible for tRNA U54 methylation. RlmD (assigned as YgcA previously) was first identified as a methyltransferase through its homology to the TrmA family. RlmD was then found acting as a methyltransferase on the 23S RNA for the conserved U1939. [, ]. Short Name:  23S_rRNA_MeTrfase_RlmD
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0 Child Features

1 Contains

DB identifier Type Name
IPR002792 Domain TRAM domain

2 Cross Referencess

Identifier
TIGR00479
MF_01010

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0003723 IPR001566
GO:0008173 IPR001566
GO:0006396 IPR001566

3 Ontology Annotations

GO Term Gene Name
GO:0003723 IPR001566
GO:0008173 IPR001566
GO:0006396 IPR001566

1 Parent Features

DB identifier Type Name
IPR010280 Family (Uracil-5)-methyltransferase family

380 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
170457 D8RD96 PAC:15405991 Selaginella moellendorffii 536  
evm.model.supercontig_131.17 PAC:16408009 Carica papaya 323  
30146.m003439 B9RQ77 PAC:16819561 Ricinus communis 577  
Cucsa.360750.1 A0A0A0KB04 PAC:16980801 Cucumis sativus 562  
Cucsa.360750.2 PAC:16980802 Cucumis sativus 493  
orange1.1g043853m PAC:18103630 Citrus sinensis 222  
AT3G21300.1 Q9LU28 PAC:19660768 Arabidopsis thaliana 554  
Thhalv10020447m V4LV75 PAC:20183506 Eutrema salsugineum 549  
Ciclev10025277m V4SRG3 PAC:20801251 Citrus clementina 567  
Lus10009743 PAC:23145167 Linum usitatissimum 557  
Lus10000172 PAC:23143165 Linum usitatissimum 255  
Potri.001G195300.1 PAC:27040883 Populus trichocarpa 580  
Gorai.011G069100.6 A0A0D2UNS5 PAC:26810315 Gossypium raimondii 492  
Gorai.011G069100.2 A0A0D2UNS5 PAC:26810313 Gossypium raimondii 492  
Gorai.011G069100.1 A0A0D2T3P1 PAC:26810310 Gossypium raimondii 551  
Gorai.011G069100.7 A0A0D2UNS9 PAC:26810316 Gossypium raimondii 451  
Gorai.011G069100.5 A0A0D2UNS5 PAC:26810314 Gossypium raimondii 492  
Gorai.011G069100.4 A0A0D2UQ42 PAC:26810312 Gossypium raimondii 522  
Gorai.011G069100.3 A0A0D2RI43 PAC:26810311 Gossypium raimondii 529  
2897 I0YUW9 PAC:27385651 Coccomyxa subellipsoidea C-169 484  
31857 C1MLF0 PAC:27343025 Micromonas pusilla CCMP1545 549  
68096 C1E1X6 PAC:27398177 Micromonas sp RCC299 473  
39526 A4RQV8 PAC:27418090 Ostreococcus lucimarinus 536  
Thecc1EG028965t1 A0A061GIW3 PAC:27439144 Theobroma cacao 543  
Thecc1EG028965t2 A0A061GAT7 PAC:27439145 Theobroma cacao 535  
Migut.I00980.1.p A0A022Q0X6 PAC:28930292 Mimulus guttatus 560  
Migut.I00980.2.p A0A022Q4J2 PAC:28930293 Mimulus guttatus 497  
Araha.25327s0003.1.p PAC:28839687 Arabidopsis halleri 553  
Cagra.1757s0021.1.p PAC:28909828 Capsella grandiflora 556  
Glyma.13G352500.2.p K7M3P7 PAC:30500082 Glycine max 506  

2 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11779873
            12907714