Protein Domain : IPR002129

Type:  Family Name:  Pyridoxal phosphate-dependent decarboxylase
Description:  Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy [].PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic [].A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ]. Short Name:  PyrdxlP-dep_de-COase

5 Child Features

DB identifier Type Name
IPR010107 Family Glutamate decarboxylase
IPR010977 Family Aromatic-L-amino-acid decarboxylase
IPR022397 Family Tyrosine decarboxylase, bacteria
IPR023523 Family Histidine decarboxylase, bacteria
IPR020931 Family Tyrosine decarboxylase

3 Contains

DB identifier Type Name
IPR015421 Domain Pyridoxal phosphate-dependent transferase, major region, subdomain 1
IPR015422 Domain Pyridoxal phosphate-dependent transferase, major region, subdomain 2
IPR021115 Binding_site Pyridoxal-phosphate binding site

1 Cross References

Identifier
PF00282

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0016831 IPR002129
GO:0030170 IPR002129
GO:0019752 IPR002129

3 Ontology Annotations

GO Term Gene Name
GO:0016831 IPR002129
GO:0030170 IPR002129
GO:0019752 IPR002129

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
79134 D8QUY4 PAC:15422028 Selaginella moellendorffii 517  
78872 D8QU94 PAC:15402317 Selaginella moellendorffii 419  
175502 D8RYU7 PAC:15421214 Selaginella moellendorffii 472  
84876 D8R3Z6 PAC:15420188 Selaginella moellendorffii 527  
121532 D8SNX6 PAC:15418366 Selaginella moellendorffii 417  
402512 D8QQW6 PAC:15404929 Selaginella moellendorffii 593  
89475 D8RAL8 PAC:15409429 Selaginella moellendorffii 517  
89728 D8RAL5 PAC:15411637 Selaginella moellendorffii 517  
439888 D8R817 PAC:15404798 Selaginella moellendorffii 591  
164618 D8QTG6 PAC:15411995 Selaginella moellendorffii 513  
270727 D8RC09 PAC:15422483 Selaginella moellendorffii 522  
410502 D8REY6 PAC:15406320 Selaginella moellendorffii 540  
evm.TU.contig_28458.1 PAC:16429598 Carica papaya 514  
evm.TU.contig_31465.1 PAC:16429986 Carica papaya 113  
evm.TU.contig_32361.1 PAC:16430098 Carica papaya 391  
evm.model.supercontig_2.75 PAC:16412865 Carica papaya 500  
evm.model.supercontig_21.183 PAC:16413462 Carica papaya 488  
evm.model.supercontig_34.65 PAC:16418012 Carica papaya 506  
evm.model.supercontig_51.70 PAC:16421889 Carica papaya 494  
evm.model.supercontig_7.144 PAC:16425047 Carica papaya 483  
evm.model.supercontig_87.42 PAC:16427710 Carica papaya 480  
29780.m001375 B9S7C2 PAC:16808406 Ricinus communis 297  
29780.m001376 B9S7C3 PAC:16808407 Ricinus communis 180  
29929.m004623 B9RMB8 PAC:16813862 Ricinus communis 541  
29950.m001181 B9SHK6 PAC:16814455 Ricinus communis 445  
29982.m000222 B9T448 PAC:16814867 Ricinus communis 471  
60499.m000013 B9TJH6 PAC:16829363 Ricinus communis 239  
29637.m000726 B9SKL3 PAC:16804377 Ricinus communis 492  
27544.m000014 B9TBY0 PAC:16798661 Ricinus communis 174  
28725.m000309 B9SXE9 PAC:16801595 Ricinus communis 316  

10 Publications

First Author Title Year Journal Volume Pages PubMed ID
            8181483
            7748903
            15581583
            8690703
            15189147
            16763894
            17109392
            8889823
            2124279
            2300558