Protein Domain : IPR009072

Type:  Domain Name:  Histone-fold
Description:  Histones mediate DNA organisation and plays a dominant role in regulating eukaryotic transcription. The histone-fold consists of a core of three helices, where the long middle helix is flanked at each end by shorter ones. The histone fold is a structural element that facilitates heterodimerisation [, , ]. Proteins displaying this structure include the nucleosome core histones, which form octomers composed of two copies of each of the four histones, H2A, H2B, H3 and H4; archaeal histone, which possesses only the core domain part of eukaryotic histone; and the TATA-box binding protein (TBP)-associated factors (TAF), where the histone fold is a common motif for mediating TAF-TAF interactions. TAF proteins include TAF(II)18 and TAF(II)28, which form a heterodimer, TAF(II)42 and TAF(II)62, which form a heterotetramer similar to (H3-H4)2, and the negative cofactor 2 (NC2) alpha and beta chains, which form a heterodimer. The TAF proteins are a component of transcription factor IID (TFIID), along with the TBP protein. TFIID forms part of the pre-initiation complex on core promoter elements required for RNA polymerase II-dependent transcription. The TAF subunits of TFIID mediate transcriptional activation of subsets of eukaryotic genes. The NC2 complex mediates the inhibition of TATA-dependent transcription through interactions with TBP. Short Name:  Histone-fold

4 Child Features

DB identifier Type Name
IPR003958 Domain Transcription factor CBF/NF-Y/archaeal histone domain
IPR007125 Domain Histone H2A/H2B/H3
IPR004823 Domain TATA box binding protein associated factor (TAF)
IPR003228 Domain Transcription initiation factor TFIID

2 Contains

DB identifier Type Name
IPR003956 Conserved_site Transcription factor, NFYB/HAP3, conserved site
IPR019809 Conserved_site Histone H4, conserved site

2 Cross Referencess

Identifier
G3DSA:1.10.20.10
SSF47113

3 Found Ins

DB identifier Type Name
IPR006809 Family TAFII28-like protein
IPR003195 Family Transcription initiation factor IID, 18kDa subunit
IPR021171 Family Core histone macro-H2A

1 GO Annotation

GO Term Gene Name
GO:0046982 IPR009072

1 Ontology Annotations

GO Term Gene Name
GO:0046982 IPR009072

0 Parent Features

39395 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
170948 D8RF75 PAC:15409856 Selaginella moellendorffii 136  
146848 D8RG19 PAC:15404934 Selaginella moellendorffii 484  
171192 D8RG31 PAC:15406716 Selaginella moellendorffii 126  
38585 D8SPP6 PAC:15416008 Selaginella moellendorffii 134  
410943 D8RGD1 PAC:15409511 Selaginella moellendorffii 216  
69246 PAC:15415785 Selaginella moellendorffii 88  
93288 D8RGS9 PAC:15419897 Selaginella moellendorffii 101  
438193 PAC:15419016 Selaginella moellendorffii 136  
78992 PAC:15403087 Selaginella moellendorffii 136  
18569 D8RNW6 PAC:15401490 Selaginella moellendorffii 104  
38507 PAC:15415802 Selaginella moellendorffii 130  
442185 PAC:15408539 Selaginella moellendorffii 121  
100288 D8RRZ6 PAC:15421096 Selaginella moellendorffii 125  
59588 D8RV21 PAC:15411011 Selaginella moellendorffii 120  
103546 PAC:15409822 Selaginella moellendorffii 136  
6783 D8RW74 PAC:15401692 Selaginella moellendorffii 118  
150847 PAC:15417023 Selaginella moellendorffii 103  
7686 D8QY56 PAC:15403764 Selaginella moellendorffii 78  
69582 D8QY57 PAC:15418135 Selaginella moellendorffii 89  
106159 D8S0J0 PAC:15415619 Selaginella moellendorffii 120  
176603 D8S3M3 PAC:15402605 Selaginella moellendorffii 136  
166626 D8QZC9 PAC:15417838 Selaginella moellendorffii 137  
110491 D8S7E0 PAC:15407473 Selaginella moellendorffii 55  
233579 PAC:15423336 Selaginella moellendorffii 103  
227538 D8R2T0 PAC:15405469 Selaginella moellendorffii 145  
58662 D8SEV8 PAC:15408692 Selaginella moellendorffii 147  
167497 PAC:15419391 Selaginella moellendorffii 103  
7113 D8R3L7 PAC:15422104 Selaginella moellendorffii 96  
122533 D8SQE3 PAC:15421176 Selaginella moellendorffii 135  
269004 D8SQ57 PAC:15414065 Selaginella moellendorffii 136  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            16260604
            8670811
            8754798