Protein Domain : IPR002016

Type:  Domain Name:  Haem peroxidase, plant/fungal/bacterial
Description:  Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions.Most haem peroxidases follow the reaction scheme: Fe3++ H2O2-->[Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate -->[Fe4+=O]R (Compound II) + oxidised substrate[Fe4+=O]R + substrate -->Fe3++ H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical [].Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes. ClassI, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transportchain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removalin chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It isthought that catalase-peroxidase provides protection to cells under oxidative stress [].Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These aremonomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+serves as the reducing substrate []. Class II proteins contain fourconserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide fromchloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. Short Name:  Haem_peroxidase_pln/fun/bac

0 Child Features

2 Contains

DB identifier Type Name
IPR019793 Binding_site Peroxidases heam-ligand binding site
IPR019794 Active_site Peroxidase, active site

3 Cross Referencess

Identifier
PF00141
PR00458
PS50873

5 Found Ins

DB identifier Type Name
IPR002207 Family Plant ascorbate peroxidase
IPR010255 Family Haem peroxidase
IPR000823 Family Plant peroxidase
IPR001621 Family Fungal ligninase
IPR000763 Family Catalase-peroxidase haem

4 GO Annotations

GO Term Gene Name
GO:0004601 IPR002016
GO:0020037 IPR002016
GO:0006979 IPR002016
GO:0055114 IPR002016

4 Ontology Annotations

GO Term Gene Name
GO:0004601 IPR002016
GO:0020037 IPR002016
GO:0006979 IPR002016
GO:0055114 IPR002016

0 Parent Features

38556 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
231472 D8RG06 PAC:15416848 Selaginella moellendorffii 321  
430498 D8T9L5 PAC:15420192 Selaginella moellendorffii 594  
135053 D8T9L4 PAC:15411204 Selaginella moellendorffii 149  
136759 D8TCB8 PAC:15419403 Selaginella moellendorffii 267  
136751 D8TCC3 PAC:15419394 Selaginella moellendorffii 137  
136749 D8TCE9 PAC:15419378 Selaginella moellendorffii 80  
137067 D8TCU7 PAC:15417021 Selaginella moellendorffii 330  
236822 D8TE02 PAC:15412077 Selaginella moellendorffii 310  
14687 D8RLX8 PAC:15412979 Selaginella moellendorffii 285  
231875 D8RLP7 PAC:15419884 Selaginella moellendorffii 312  
3741 D8RLX7 PAC:15415249 Selaginella moellendorffii 285  
96952 D8RLM9 PAC:15411669 Selaginella moellendorffii 347  
413062 D8RN80 PAC:15411482 Selaginella moellendorffii 306  
97402 D8RMR9 PAC:15410665 Selaginella moellendorffii 316  
97331 D8RMB1 PAC:15409914 Selaginella moellendorffii 332  
97201 D8RNF5 PAC:15409055 Selaginella moellendorffii 283  
138345 D8TF49 PAC:15422046 Selaginella moellendorffii 113  
28740 D8QVR3 PAC:15410235 Selaginella moellendorffii 128  
230146 D8QVR1 PAC:15411587 Selaginella moellendorffii 341  
79034 D8QUT9 PAC:15421290 Selaginella moellendorffii 333  
101384 D8RT20 PAC:15402483 Selaginella moellendorffii 59  
101258 D8RT11 PAC:15401663 Selaginella moellendorffii 315  
101253 D8RT10 PAC:15401662 Selaginella moellendorffii 320  
232270 D8RT22 PAC:15418239 Selaginella moellendorffii 302  
232269 D8RT21 PAC:15418216 Selaginella moellendorffii 315  
414521 D8RT12 PAC:15418092 Selaginella moellendorffii 322  
232359 D8RUS5 PAC:15418990 Selaginella moellendorffii 336  
228326 D8RVX4 PAC:15406830 Selaginella moellendorffii 318  
266691 D8QY20 PAC:15409987 Selaginella moellendorffii 325  
104905 D8RZ04 PAC:15415754 Selaginella moellendorffii 328  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            1954228
            8062820
            7922023
            8167033