Gene : Bradi1g09870 B. distachyon v3.1
Defline:  (1 of 1) 2.1.1.193 - 16S rRNA (uracil(1498)-N(3))-methyltransferase / M(3)U(1498) specific methyltransferase Genomic Order:  1263
Name:  ? Bradi1g09870 Secondary Identifier:  ? PAC:32795264
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g09870 0.5kb upstream 0.5kb upstream 4425 true Bd1: 7104034-7108458 Brachypodium distachyon
Bradi1g09870 0.5kb upstream 0.5kb upstream 500 false Bd1: 7107959-7108458 Brachypodium distachyon
Bradi1g09870 0.5kb downstream 0.5kb downstream 4425 true Bd1: 7103534-7107958 Brachypodium distachyon
Bradi1g09870 0.5kb downstream 0.5kb downstream 500 false Bd1: 7103534-7104033 Brachypodium distachyon
Bradi1g09870 1.0kb upstream 1.0kb upstream 4925 true Bd1: 7104034-7108958 Brachypodium distachyon
Bradi1g09870 1.0kb upstream 1.0kb upstream 1000 false Bd1: 7107959-7108958 Brachypodium distachyon
Bradi1g09870 1.0kb downstream 1.0kb downstream 4925 true Bd1: 7103034-7107958 Brachypodium distachyon
Bradi1g09870 1.0kb downstream 1.0kb downstream 1000 false Bd1: 7103034-7104033 Brachypodium distachyon
Bradi1g09870 2.0kb upstream 2.0kb upstream 5925 true Bd1: 7104034-7109958 Brachypodium distachyon
Bradi1g09870 2.0kb upstream 2.0kb upstream 2000 false Bd1: 7107959-7109958 Brachypodium distachyon
Bradi1g09870 2.0kb downstream 2.0kb downstream 5925 true Bd1: 7102034-7107958 Brachypodium distachyon
Bradi1g09870 2.0kb downstream 2.0kb downstream 2000 false Bd1: 7102034-7104033 Brachypodium distachyon
Bradi1g09870 5.0kb upstream 5.0kb upstream 8925 true Bd1: 7104034-7112958 Brachypodium distachyon
Bradi1g09870 5.0kb upstream 5.0kb upstream 5000 false Bd1: 7107959-7112958 Brachypodium distachyon
Bradi1g09870 5.0kb downstream 5.0kb downstream 8925 true Bd1: 7099034-7107958 Brachypodium distachyon
Bradi1g09870 5.0kb downstream 5.0kb downstream 5000 false Bd1: 7099034-7104033 Brachypodium distachyon
Bradi1g09870 10.0kb upstream 10.0kb upstream 13925 true Bd1: 7104034-7117958 Brachypodium distachyon
Bradi1g09870 10.0kb upstream 10.0kb upstream 10000 false Bd1: 7107959-7117958 Brachypodium distachyon
Bradi1g09870 10.0kb downstream 10.0kb downstream 13925 true Bd1: 7094034-7107958 Brachypodium distachyon
Bradi1g09870 10.0kb downstream 10.0kb downstream 10000 false Bd1: 7094034-7104033 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572813 5269 Grass View MSA
122046212 5273 Angiosperm View MSA
121345498 5274 Embryophyte View MSA
123427980 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.373        
cufflinks 2.17       High
cufflinks 1.342        
cufflinks 2.261       High
cufflinks 0.893        
cufflinks 1.32        
cufflinks 1.603        
cufflinks 1.032        
cufflinks 1.148        
cufflinks 1.253        
cufflinks 0.406       Low
cufflinks 0.903        
cufflinks 0.415       Low
cufflinks 0.424       Low
cufflinks 0.598        
cufflinks 1.369        
cufflinks 1.137        
cufflinks 0.639        
cufflinks 1.391        
cufflinks 0.531        
cufflinks 1.046        
cufflinks 1.272        
cufflinks 0.869        
cufflinks 1.031        
cufflinks 1.484        
cufflinks 1.304        
cufflinks 0.208       Low
cufflinks 1.002        
cufflinks 1.052        
cufflinks 1.381        

0 Strain