Gene : SKD1 A. thaliana TAIR10
Primary Identifier:  ? AT2G27600 Defline:  (1 of 2) K12196 - vacuolar protein-sorting-associated protein 4 (VPS4)
Genomic Order:  2048 Name:  ? AT2G27600
Secondary Identifier:  ? PAC:19639609
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0 Pathways

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G27600 0.5kb upstream 0.5kb upstream 3455 true Chr2: 11780538-11783992 Arabidopsis thaliana
AT2G27600 0.5kb upstream 0.5kb upstream 500 false Chr2: 11780538-11781037 Arabidopsis thaliana
AT2G27600 0.5kb downstream 0.5kb downstream 3455 true Chr2: 11781038-11784492 Arabidopsis thaliana
AT2G27600 0.5kb downstream 0.5kb downstream 500 false Chr2: 11783993-11784492 Arabidopsis thaliana
AT2G27600 1.0kb upstream 1.0kb upstream 3955 true Chr2: 11780038-11783992 Arabidopsis thaliana
AT2G27600 1.0kb upstream 1.0kb upstream 1000 false Chr2: 11780038-11781037 Arabidopsis thaliana
AT2G27600 1.0kb downstream 1.0kb downstream 3955 true Chr2: 11781038-11784992 Arabidopsis thaliana
AT2G27600 1.0kb downstream 1.0kb downstream 1000 false Chr2: 11783993-11784992 Arabidopsis thaliana
AT2G27600 2.0kb upstream 2.0kb upstream 4955 true Chr2: 11779038-11783992 Arabidopsis thaliana
AT2G27600 2.0kb upstream 2.0kb upstream 2000 false Chr2: 11779038-11781037 Arabidopsis thaliana
AT2G27600 2.0kb downstream 2.0kb downstream 4955 true Chr2: 11781038-11785992 Arabidopsis thaliana
AT2G27600 2.0kb downstream 2.0kb downstream 2000 false Chr2: 11783993-11785992 Arabidopsis thaliana
AT2G27600 5.0kb upstream 5.0kb upstream 7955 true Chr2: 11776038-11783992 Arabidopsis thaliana
AT2G27600 5.0kb upstream 5.0kb upstream 5000 false Chr2: 11776038-11781037 Arabidopsis thaliana
AT2G27600 5.0kb downstream 5.0kb downstream 7955 true Chr2: 11781038-11788992 Arabidopsis thaliana
AT2G27600 5.0kb downstream 5.0kb downstream 5000 false Chr2: 11783993-11788992 Arabidopsis thaliana
AT2G27600 10.0kb upstream 10.0kb upstream 12955 true Chr2: 11771038-11783992 Arabidopsis thaliana
AT2G27600 10.0kb upstream 10.0kb upstream 10000 false Chr2: 11771038-11781037 Arabidopsis thaliana
AT2G27600 10.0kb downstream 10.0kb downstream 12955 true Chr2: 11781038-11793992 Arabidopsis thaliana
AT2G27600 10.0kb downstream 10.0kb downstream 10000 false Chr2: 11783993-11793992 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040967 5273 Angiosperm View MSA
122365363 5261 Brassicaceae View MSA
123838634 5264 Brassicales-Malvales View MSA
124345021 5266 SBM View MSA
124239151 5268 Malvidae View MSA
124065448 5270 Rosid View MSA
123749867 5271 Pentapetalae View MSA
122796132 5272 Eudicot View MSA
121350779 5274 Embryophyte View MSA
123428117 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 44.47     High  
cufflinks 43.079     High  
cufflinks 37.502     High Low
cufflinks 44.317     High  
cufflinks 39.712     High  
cufflinks 45.741     High  

0 Strain