Gene : NF-YC3 A. thaliana TAIR10
Primary Identifier:  ? AT1G54830 Defline:  (1 of 2) K08066 - nuclear transcription factor Y, gamma (NFYC)
Genomic Order:  4534 Name:  ? AT1G54830
Secondary Identifier:  ? PAC:19651494
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G54830 0.5kb upstream 0.5kb upstream 2089 true Chr1: 20450583-20452671 Arabidopsis thaliana
AT1G54830 0.5kb upstream 0.5kb upstream 500 false Chr1: 20450583-20451082 Arabidopsis thaliana
AT1G54830 0.5kb downstream 0.5kb downstream 2089 true Chr1: 20451083-20453171 Arabidopsis thaliana
AT1G54830 0.5kb downstream 0.5kb downstream 500 false Chr1: 20452672-20453171 Arabidopsis thaliana
AT1G54830 1.0kb upstream 1.0kb upstream 2589 true Chr1: 20450083-20452671 Arabidopsis thaliana
AT1G54830 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20450083-20451082 Arabidopsis thaliana
AT1G54830 1.0kb downstream 1.0kb downstream 2589 true Chr1: 20451083-20453671 Arabidopsis thaliana
AT1G54830 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20452672-20453671 Arabidopsis thaliana
AT1G54830 2.0kb upstream 2.0kb upstream 3589 true Chr1: 20449083-20452671 Arabidopsis thaliana
AT1G54830 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20449083-20451082 Arabidopsis thaliana
AT1G54830 2.0kb downstream 2.0kb downstream 3589 true Chr1: 20451083-20454671 Arabidopsis thaliana
AT1G54830 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20452672-20454671 Arabidopsis thaliana
AT1G54830 5.0kb upstream 5.0kb upstream 6589 true Chr1: 20446083-20452671 Arabidopsis thaliana
AT1G54830 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20446083-20451082 Arabidopsis thaliana
AT1G54830 5.0kb downstream 5.0kb downstream 6589 true Chr1: 20451083-20457671 Arabidopsis thaliana
AT1G54830 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20452672-20457671 Arabidopsis thaliana
AT1G54830 10.0kb upstream 10.0kb upstream 11589 true Chr1: 20441083-20452671 Arabidopsis thaliana
AT1G54830 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20441083-20451082 Arabidopsis thaliana
AT1G54830 10.0kb downstream 10.0kb downstream 11589 true Chr1: 20451083-20462671 Arabidopsis thaliana
AT1G54830 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20452672-20462671 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375780 5261 Brassicaceae View MSA
123835897 5264 Brassicales-Malvales View MSA
124322105 5266 SBM View MSA
124251136 5268 Malvidae View MSA
124071144 5270 Rosid View MSA
123743416 5271 Pentapetalae View MSA
122794744 5272 Eudicot View MSA
122049278 5273 Angiosperm View MSA
123429029 5275 Viridiplantae View MSA
121351220 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.752        
cufflinks 5.206       Low
cufflinks 5.103       Low
cufflinks 6.503       High
cufflinks 5.797        
cufflinks 5.943        

0 Strain