Gene : AT1G28180 A. thaliana TAIR10
Defline:  (1 of 2) K12858 - ATP-dependent RNA helicase DDX23/PRP28 (DDX23, PRP28) Genomic Order:  2796
Name:  ? AT1G28180 Secondary Identifier:  ? PAC:19656428
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G28180 0.5kb upstream 0.5kb upstream 2428 true Chr1: 9843075-9845502 Arabidopsis thaliana
AT1G28180 0.5kb upstream 0.5kb upstream 500 false Chr1: 9845003-9845502 Arabidopsis thaliana
AT1G28180 0.5kb downstream 0.5kb downstream 2428 true Chr1: 9842575-9845002 Arabidopsis thaliana
AT1G28180 0.5kb downstream 0.5kb downstream 500 false Chr1: 9842575-9843074 Arabidopsis thaliana
AT1G28180 1.0kb upstream 1.0kb upstream 2928 true Chr1: 9843075-9846002 Arabidopsis thaliana
AT1G28180 1.0kb upstream 1.0kb upstream 1000 false Chr1: 9845003-9846002 Arabidopsis thaliana
AT1G28180 1.0kb downstream 1.0kb downstream 2928 true Chr1: 9842075-9845002 Arabidopsis thaliana
AT1G28180 1.0kb downstream 1.0kb downstream 1000 false Chr1: 9842075-9843074 Arabidopsis thaliana
AT1G28180 2.0kb upstream 2.0kb upstream 3928 true Chr1: 9843075-9847002 Arabidopsis thaliana
AT1G28180 2.0kb upstream 2.0kb upstream 2000 false Chr1: 9845003-9847002 Arabidopsis thaliana
AT1G28180 2.0kb downstream 2.0kb downstream 3928 true Chr1: 9841075-9845002 Arabidopsis thaliana
AT1G28180 2.0kb downstream 2.0kb downstream 2000 false Chr1: 9841075-9843074 Arabidopsis thaliana
AT1G28180 5.0kb upstream 5.0kb upstream 6928 true Chr1: 9843075-9850002 Arabidopsis thaliana
AT1G28180 5.0kb upstream 5.0kb upstream 5000 false Chr1: 9845003-9850002 Arabidopsis thaliana
AT1G28180 5.0kb downstream 5.0kb downstream 6928 true Chr1: 9838075-9845002 Arabidopsis thaliana
AT1G28180 5.0kb downstream 5.0kb downstream 5000 false Chr1: 9838075-9843074 Arabidopsis thaliana
AT1G28180 10.0kb upstream 10.0kb upstream 11928 true Chr1: 9843075-9855002 Arabidopsis thaliana
AT1G28180 10.0kb upstream 10.0kb upstream 10000 false Chr1: 9845003-9855002 Arabidopsis thaliana
AT1G28180 10.0kb downstream 10.0kb downstream 11928 true Chr1: 9833075-9845002 Arabidopsis thaliana
AT1G28180 10.0kb downstream 10.0kb downstream 10000 false Chr1: 9833075-9843074 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122338273 5261 Brassicaceae View MSA
123778871 5264 Brassicales-Malvales View MSA
124277207 5266 SBM View MSA
124132429 5268 Malvidae View MSA
123860736 5270 Rosid View MSA
123446332 5271 Pentapetalae View MSA
122481884 5272 Eudicot View MSA
122047415 5273 Angiosperm View MSA
121348865 5274 Embryophyte View MSA
123426730 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.008     Low  
cufflinks 0.008     Low  
cufflinks 0.022     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.078     Low High
cufflinks 0.016     Low  

0 Strain