Gene : AT3G16680 A. thaliana TAIR10
Defline:  (1 of 6) PF01191 - RNA polymerase Rpb5, C-terminal domain (RNA_pol_Rpb5_C) Genomic Order:  1713
Name:  ? AT3G16680 Secondary Identifier:  ? PAC:19660753
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G16680 0.5kb upstream 0.5kb upstream 1410 true Chr3: 5682836-5684245 Arabidopsis thaliana
AT3G16680 0.5kb upstream 0.5kb upstream 500 false Chr3: 5682836-5683335 Arabidopsis thaliana
AT3G16680 0.5kb downstream 0.5kb downstream 1410 true Chr3: 5683336-5684745 Arabidopsis thaliana
AT3G16680 0.5kb downstream 0.5kb downstream 500 false Chr3: 5684246-5684745 Arabidopsis thaliana
AT3G16680 1.0kb upstream 1.0kb upstream 1910 true Chr3: 5682336-5684245 Arabidopsis thaliana
AT3G16680 1.0kb upstream 1.0kb upstream 1000 false Chr3: 5682336-5683335 Arabidopsis thaliana
AT3G16680 1.0kb downstream 1.0kb downstream 1910 true Chr3: 5683336-5685245 Arabidopsis thaliana
AT3G16680 1.0kb downstream 1.0kb downstream 1000 false Chr3: 5684246-5685245 Arabidopsis thaliana
AT3G16680 2.0kb upstream 2.0kb upstream 2910 true Chr3: 5681336-5684245 Arabidopsis thaliana
AT3G16680 2.0kb upstream 2.0kb upstream 2000 false Chr3: 5681336-5683335 Arabidopsis thaliana
AT3G16680 2.0kb downstream 2.0kb downstream 2910 true Chr3: 5683336-5686245 Arabidopsis thaliana
AT3G16680 2.0kb downstream 2.0kb downstream 2000 false Chr3: 5684246-5686245 Arabidopsis thaliana
AT3G16680 5.0kb upstream 5.0kb upstream 5910 true Chr3: 5678336-5684245 Arabidopsis thaliana
AT3G16680 5.0kb upstream 5.0kb upstream 5000 false Chr3: 5678336-5683335 Arabidopsis thaliana
AT3G16680 5.0kb downstream 5.0kb downstream 5910 true Chr3: 5683336-5689245 Arabidopsis thaliana
AT3G16680 5.0kb downstream 5.0kb downstream 5000 false Chr3: 5684246-5689245 Arabidopsis thaliana
AT3G16680 10.0kb upstream 10.0kb upstream 10910 true Chr3: 5673336-5684245 Arabidopsis thaliana
AT3G16680 10.0kb upstream 10.0kb upstream 10000 false Chr3: 5673336-5683335 Arabidopsis thaliana
AT3G16680 10.0kb downstream 10.0kb downstream 10910 true Chr3: 5683336-5694245 Arabidopsis thaliana
AT3G16680 10.0kb downstream 10.0kb downstream 10000 false Chr3: 5684246-5694245 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122329893 5261 Brassicaceae Singleton cluster - no MSA
123771176 5264 Brassicales-Malvales Singleton cluster - no MSA
124269708 5266 SBM Singleton cluster - no MSA
124125832 5268 Malvidae Singleton cluster - no MSA
123854780 5270 Rosid Singleton cluster - no MSA
123752021 5271 Pentapetalae View MSA
122793391 5272 Eudicot View MSA
122044572 5273 Angiosperm View MSA
121347059 5274 Embryophyte View MSA
123424632 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.016     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.018     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.018     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain