Gene : NRPB5 A. thaliana TAIR10
Primary Identifier:  ? AT3G22320 Defline:  (1 of 5) K03013 - DNA-directed RNA polymerases I, II, and III subunit RPABC1 (RPB5, POLR2E)
Genomic Order:  2332 Name:  ? AT3G22320
Secondary Identifier:  ? PAC:19658778
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0 Pathways

Genomics

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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G22320 0.5kb upstream 0.5kb upstream 1984 true Chr3: 7890864-7892847 Arabidopsis thaliana
AT3G22320 0.5kb upstream 0.5kb upstream 500 false Chr3: 7892348-7892847 Arabidopsis thaliana
AT3G22320 0.5kb downstream 0.5kb downstream 1984 true Chr3: 7890364-7892347 Arabidopsis thaliana
AT3G22320 0.5kb downstream 0.5kb downstream 500 false Chr3: 7890364-7890863 Arabidopsis thaliana
AT3G22320 1.0kb upstream 1.0kb upstream 2484 true Chr3: 7890864-7893347 Arabidopsis thaliana
AT3G22320 1.0kb upstream 1.0kb upstream 1000 false Chr3: 7892348-7893347 Arabidopsis thaliana
AT3G22320 1.0kb downstream 1.0kb downstream 2484 true Chr3: 7889864-7892347 Arabidopsis thaliana
AT3G22320 1.0kb downstream 1.0kb downstream 1000 false Chr3: 7889864-7890863 Arabidopsis thaliana
AT3G22320 2.0kb upstream 2.0kb upstream 3484 true Chr3: 7890864-7894347 Arabidopsis thaliana
AT3G22320 2.0kb upstream 2.0kb upstream 2000 false Chr3: 7892348-7894347 Arabidopsis thaliana
AT3G22320 2.0kb downstream 2.0kb downstream 3484 true Chr3: 7888864-7892347 Arabidopsis thaliana
AT3G22320 2.0kb downstream 2.0kb downstream 2000 false Chr3: 7888864-7890863 Arabidopsis thaliana
AT3G22320 5.0kb upstream 5.0kb upstream 6484 true Chr3: 7890864-7897347 Arabidopsis thaliana
AT3G22320 5.0kb upstream 5.0kb upstream 5000 false Chr3: 7892348-7897347 Arabidopsis thaliana
AT3G22320 5.0kb downstream 5.0kb downstream 6484 true Chr3: 7885864-7892347 Arabidopsis thaliana
AT3G22320 5.0kb downstream 5.0kb downstream 5000 false Chr3: 7885864-7890863 Arabidopsis thaliana
AT3G22320 10.0kb upstream 10.0kb upstream 11484 true Chr3: 7890864-7902347 Arabidopsis thaliana
AT3G22320 10.0kb upstream 10.0kb upstream 10000 false Chr3: 7892348-7902347 Arabidopsis thaliana
AT3G22320 10.0kb downstream 10.0kb downstream 11484 true Chr3: 7880864-7892347 Arabidopsis thaliana
AT3G22320 10.0kb downstream 10.0kb downstream 10000 false Chr3: 7880864-7890863 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371657 5261 Brassicaceae View MSA
123833718 5264 Brassicales-Malvales View MSA
124340566 5266 SBM View MSA
124242111 5268 Malvidae View MSA
124061501 5270 Rosid View MSA
123752021 5271 Pentapetalae View MSA
122793391 5272 Eudicot View MSA
122044572 5273 Angiosperm View MSA
121347059 5274 Embryophyte View MSA
123424632 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 52.294     High  
cufflinks 59.467     High  
cufflinks 42.149     High Low
cufflinks 62.05     High  
cufflinks 38.791     High Low
cufflinks 57.477     High  

0 Strain