Gene : AT3G48960 A. thaliana TAIR10
Defline:  (1 of 3) K02873 - large subunit ribosomal protein L13e (RP-L13e, RPL13) Genomic Order:  3890
Name:  ? AT3G48960 Secondary Identifier:  ? PAC:19661368
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G48960 0.5kb upstream 0.5kb upstream 1469 true Chr3: 18150444-18151912 Arabidopsis thaliana
AT3G48960 0.5kb upstream 0.5kb upstream 500 false Chr3: 18151413-18151912 Arabidopsis thaliana
AT3G48960 0.5kb downstream 0.5kb downstream 1469 true Chr3: 18149944-18151412 Arabidopsis thaliana
AT3G48960 0.5kb downstream 0.5kb downstream 500 false Chr3: 18149944-18150443 Arabidopsis thaliana
AT3G48960 1.0kb upstream 1.0kb upstream 1969 true Chr3: 18150444-18152412 Arabidopsis thaliana
AT3G48960 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18151413-18152412 Arabidopsis thaliana
AT3G48960 1.0kb downstream 1.0kb downstream 1969 true Chr3: 18149444-18151412 Arabidopsis thaliana
AT3G48960 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18149444-18150443 Arabidopsis thaliana
AT3G48960 2.0kb upstream 2.0kb upstream 2969 true Chr3: 18150444-18153412 Arabidopsis thaliana
AT3G48960 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18151413-18153412 Arabidopsis thaliana
AT3G48960 2.0kb downstream 2.0kb downstream 2969 true Chr3: 18148444-18151412 Arabidopsis thaliana
AT3G48960 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18148444-18150443 Arabidopsis thaliana
AT3G48960 5.0kb upstream 5.0kb upstream 5969 true Chr3: 18150444-18156412 Arabidopsis thaliana
AT3G48960 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18151413-18156412 Arabidopsis thaliana
AT3G48960 5.0kb downstream 5.0kb downstream 5969 true Chr3: 18145444-18151412 Arabidopsis thaliana
AT3G48960 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18145444-18150443 Arabidopsis thaliana
AT3G48960 10.0kb upstream 10.0kb upstream 10969 true Chr3: 18150444-18161412 Arabidopsis thaliana
AT3G48960 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18151413-18161412 Arabidopsis thaliana
AT3G48960 10.0kb downstream 10.0kb downstream 10969 true Chr3: 18140444-18151412 Arabidopsis thaliana
AT3G48960 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18140444-18150443 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381922 5261 Brassicaceae View MSA
123840578 5264 Brassicales-Malvales View MSA
124348596 5266 SBM View MSA
124242702 5268 Malvidae View MSA
124069609 5270 Rosid View MSA
123744377 5271 Pentapetalae View MSA
122791356 5272 Eudicot View MSA
122049765 5273 Angiosperm View MSA
121344371 5274 Embryophyte View MSA
123426358 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.016     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.016     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.033     Low High

0 Strain