Gene : AT5G58720 A. thaliana TAIR10
Defline:  (1 of 4) KOG2401 - Predicted MutS-related protein involved in mismatch repair Genomic Order:  5364
Name:  ? AT5G58720 Secondary Identifier:  ? PAC:19665745
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G58720 0.5kb upstream 0.5kb upstream 3936 true Chr5: 23719702-23723637 Arabidopsis thaliana
AT5G58720 0.5kb upstream 0.5kb upstream 500 false Chr5: 23723138-23723637 Arabidopsis thaliana
AT5G58720 0.5kb downstream 0.5kb downstream 3936 true Chr5: 23719202-23723137 Arabidopsis thaliana
AT5G58720 0.5kb downstream 0.5kb downstream 500 false Chr5: 23719202-23719701 Arabidopsis thaliana
AT5G58720 1.0kb upstream 1.0kb upstream 4436 true Chr5: 23719702-23724137 Arabidopsis thaliana
AT5G58720 1.0kb upstream 1.0kb upstream 1000 false Chr5: 23723138-23724137 Arabidopsis thaliana
AT5G58720 1.0kb downstream 1.0kb downstream 4436 true Chr5: 23718702-23723137 Arabidopsis thaliana
AT5G58720 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23718702-23719701 Arabidopsis thaliana
AT5G58720 2.0kb upstream 2.0kb upstream 5436 true Chr5: 23719702-23725137 Arabidopsis thaliana
AT5G58720 2.0kb upstream 2.0kb upstream 2000 false Chr5: 23723138-23725137 Arabidopsis thaliana
AT5G58720 2.0kb downstream 2.0kb downstream 5436 true Chr5: 23717702-23723137 Arabidopsis thaliana
AT5G58720 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23717702-23719701 Arabidopsis thaliana
AT5G58720 5.0kb upstream 5.0kb upstream 8436 true Chr5: 23719702-23728137 Arabidopsis thaliana
AT5G58720 5.0kb upstream 5.0kb upstream 5000 false Chr5: 23723138-23728137 Arabidopsis thaliana
AT5G58720 5.0kb downstream 5.0kb downstream 8436 true Chr5: 23714702-23723137 Arabidopsis thaliana
AT5G58720 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23714702-23719701 Arabidopsis thaliana
AT5G58720 10.0kb upstream 10.0kb upstream 13436 true Chr5: 23719702-23733137 Arabidopsis thaliana
AT5G58720 10.0kb upstream 10.0kb upstream 10000 false Chr5: 23723138-23733137 Arabidopsis thaliana
AT5G58720 10.0kb downstream 10.0kb downstream 13436 true Chr5: 23709702-23723137 Arabidopsis thaliana
AT5G58720 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23709702-23719701 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371346 5261 Brassicaceae View MSA
123840824 5264 Brassicales-Malvales View MSA
124336409 5266 SBM View MSA
124239058 5268 Malvidae View MSA
124073935 5270 Rosid View MSA
123747200 5271 Pentapetalae View MSA
122786859 5272 Eudicot View MSA
122050833 5273 Angiosperm View MSA
121348139 5274 Embryophyte View MSA
123428671 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.5        
cufflinks 18.962       High
cufflinks 6.172       Low
cufflinks 13.55        
cufflinks 6.761        
cufflinks 13.953        

0 Strain