Gene : NRPB4 A. thaliana TAIR10
Primary Identifier:  ? AT5G09920 Defline:  (1 of 2) K03012 - DNA-directed RNA polymerase II subunit RPB4 (RPB4, POLR2D)
Genomic Order:  908 Name:  ? AT5G09920
Secondary Identifier:  ? PAC:19668095
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0 Pathways

Genomics

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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G09920 0.5kb upstream 0.5kb upstream 1893 true Chr5: 3095683-3097575 Arabidopsis thaliana
AT5G09920 0.5kb upstream 0.5kb upstream 500 false Chr5: 3095683-3096182 Arabidopsis thaliana
AT5G09920 0.5kb downstream 0.5kb downstream 1893 true Chr5: 3096183-3098075 Arabidopsis thaliana
AT5G09920 0.5kb downstream 0.5kb downstream 500 false Chr5: 3097576-3098075 Arabidopsis thaliana
AT5G09920 1.0kb upstream 1.0kb upstream 2393 true Chr5: 3095183-3097575 Arabidopsis thaliana
AT5G09920 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3095183-3096182 Arabidopsis thaliana
AT5G09920 1.0kb downstream 1.0kb downstream 2393 true Chr5: 3096183-3098575 Arabidopsis thaliana
AT5G09920 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3097576-3098575 Arabidopsis thaliana
AT5G09920 2.0kb upstream 2.0kb upstream 3393 true Chr5: 3094183-3097575 Arabidopsis thaliana
AT5G09920 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3094183-3096182 Arabidopsis thaliana
AT5G09920 2.0kb downstream 2.0kb downstream 3393 true Chr5: 3096183-3099575 Arabidopsis thaliana
AT5G09920 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3097576-3099575 Arabidopsis thaliana
AT5G09920 5.0kb upstream 5.0kb upstream 6393 true Chr5: 3091183-3097575 Arabidopsis thaliana
AT5G09920 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3091183-3096182 Arabidopsis thaliana
AT5G09920 5.0kb downstream 5.0kb downstream 6393 true Chr5: 3096183-3102575 Arabidopsis thaliana
AT5G09920 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3097576-3102575 Arabidopsis thaliana
AT5G09920 10.0kb upstream 10.0kb upstream 11393 true Chr5: 3086183-3097575 Arabidopsis thaliana
AT5G09920 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3086183-3096182 Arabidopsis thaliana
AT5G09920 10.0kb downstream 10.0kb downstream 11393 true Chr5: 3096183-3107575 Arabidopsis thaliana
AT5G09920 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3097576-3107575 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369881 5261 Brassicaceae View MSA
123833320 5264 Brassicales-Malvales View MSA
124337190 5266 SBM View MSA
124242479 5268 Malvidae View MSA
124060840 5270 Rosid View MSA
123744062 5271 Pentapetalae View MSA
122792383 5272 Eudicot View MSA
122048092 5273 Angiosperm View MSA
123429036 5275 Viridiplantae View MSA
121349369 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.123        
cufflinks 33.914     High  
cufflinks 24.034       Low
cufflinks 34.515     High High
cufflinks 27.648     High  
cufflinks 31.616     High  

0 Strain