Gene : Seita.9G107400 S. italica v2.2
Defline:  (1 of 1) 2.1.1.193 - 16S rRNA (uracil(1498)-N(3))-methyltransferase / M(3)U(1498) specific methyltransferase Genomic Order:  1074
Name:  ? Seita.9G107400 Secondary Identifier:  ? PAC:32693620
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G107400 0.5kb upstream 0.5kb upstream 4021 true scaffold_9: 6479736-6483756 Setaria italica
Seita.9G107400 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 6483257-6483756 Setaria italica
Seita.9G107400 0.5kb downstream 0.5kb downstream 4021 true scaffold_9: 6479236-6483256 Setaria italica
Seita.9G107400 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 6479236-6479735 Setaria italica
Seita.9G107400 1.0kb upstream 1.0kb upstream 4521 true scaffold_9: 6479736-6484256 Setaria italica
Seita.9G107400 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 6483257-6484256 Setaria italica
Seita.9G107400 1.0kb downstream 1.0kb downstream 4521 true scaffold_9: 6478736-6483256 Setaria italica
Seita.9G107400 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 6478736-6479735 Setaria italica
Seita.9G107400 2.0kb upstream 2.0kb upstream 5521 true scaffold_9: 6479736-6485256 Setaria italica
Seita.9G107400 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 6483257-6485256 Setaria italica
Seita.9G107400 2.0kb downstream 2.0kb downstream 5521 true scaffold_9: 6477736-6483256 Setaria italica
Seita.9G107400 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 6477736-6479735 Setaria italica
Seita.9G107400 5.0kb upstream 5.0kb upstream 8521 true scaffold_9: 6479736-6488256 Setaria italica
Seita.9G107400 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 6483257-6488256 Setaria italica
Seita.9G107400 5.0kb downstream 5.0kb downstream 8521 true scaffold_9: 6474736-6483256 Setaria italica
Seita.9G107400 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 6474736-6479735 Setaria italica
Seita.9G107400 10.0kb upstream 10.0kb upstream 13521 true scaffold_9: 6479736-6493256 Setaria italica
Seita.9G107400 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 6483257-6493256 Setaria italica
Seita.9G107400 10.0kb downstream 10.0kb downstream 13521 true scaffold_9: 6469736-6483256 Setaria italica
Seita.9G107400 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 6469736-6479735 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177056 5267 Panicoideae View MSA
124572813 5269 Grass View MSA
122046212 5273 Angiosperm View MSA
121345498 5274 Embryophyte View MSA
123427980 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.839        
cufflinks 1.4        
cufflinks 1.1        
cufflinks 0.852        
cufflinks 1.085        
cufflinks 1.446        
cufflinks 1.027        
cufflinks 2.064       High
cufflinks 2.161       High
cufflinks 0.878        
cufflinks 0.719        
cufflinks 1.905       High
cufflinks 0.409       Low
cufflinks 1.713       High
cufflinks 0.68        
cufflinks 1.091        
cufflinks 1.217        
cufflinks 0.701        
cufflinks 0.499       Low
cufflinks 1.822       High

0 Strain