Gene : Eucgr.I02493 E. grandis v2.0
Defline:  (1 of 1) 2.1.1.193 - 16S rRNA (uracil(1498)-N(3))-methyltransferase / M(3)U(1498) specific methyltransferase Genomic Order:  2114
Name:  ? Eucgr.I02493 Secondary Identifier:  ? PAC:32065459
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.I02493 0.5kb upstream 0.5kb upstream 3887 true Chr09: 35748680-35752566 Eucalyptus grandis
Eucgr.I02493 0.5kb upstream 0.5kb upstream 500 false Chr09: 35752067-35752566 Eucalyptus grandis
Eucgr.I02493 0.5kb downstream 0.5kb downstream 3887 true Chr09: 35748180-35752066 Eucalyptus grandis
Eucgr.I02493 0.5kb downstream 0.5kb downstream 500 false Chr09: 35748180-35748679 Eucalyptus grandis
Eucgr.I02493 1.0kb upstream 1.0kb upstream 4387 true Chr09: 35748680-35753066 Eucalyptus grandis
Eucgr.I02493 1.0kb upstream 1.0kb upstream 1000 false Chr09: 35752067-35753066 Eucalyptus grandis
Eucgr.I02493 1.0kb downstream 1.0kb downstream 4387 true Chr09: 35747680-35752066 Eucalyptus grandis
Eucgr.I02493 1.0kb downstream 1.0kb downstream 1000 false Chr09: 35747680-35748679 Eucalyptus grandis
Eucgr.I02493 2.0kb upstream 2.0kb upstream 5387 true Chr09: 35748680-35754066 Eucalyptus grandis
Eucgr.I02493 2.0kb upstream 2.0kb upstream 2000 false Chr09: 35752067-35754066 Eucalyptus grandis
Eucgr.I02493 2.0kb downstream 2.0kb downstream 5387 true Chr09: 35746680-35752066 Eucalyptus grandis
Eucgr.I02493 2.0kb downstream 2.0kb downstream 2000 false Chr09: 35746680-35748679 Eucalyptus grandis
Eucgr.I02493 5.0kb upstream 5.0kb upstream 8387 true Chr09: 35748680-35757066 Eucalyptus grandis
Eucgr.I02493 5.0kb upstream 5.0kb upstream 5000 false Chr09: 35752067-35757066 Eucalyptus grandis
Eucgr.I02493 5.0kb downstream 5.0kb downstream 8387 true Chr09: 35743680-35752066 Eucalyptus grandis
Eucgr.I02493 5.0kb downstream 5.0kb downstream 5000 false Chr09: 35743680-35748679 Eucalyptus grandis
Eucgr.I02493 10.0kb upstream 10.0kb upstream 13387 true Chr09: 35748680-35762066 Eucalyptus grandis
Eucgr.I02493 10.0kb upstream 10.0kb upstream 10000 false Chr09: 35752067-35762066 Eucalyptus grandis
Eucgr.I02493 10.0kb downstream 10.0kb downstream 13387 true Chr09: 35738680-35752066 Eucalyptus grandis
Eucgr.I02493 10.0kb downstream 10.0kb downstream 10000 false Chr09: 35738680-35748679 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124070022 5270 Rosid View MSA
123738955 5271 Pentapetalae View MSA
122790203 5272 Eudicot View MSA
122046212 5273 Angiosperm View MSA
121345498 5274 Embryophyte View MSA
123427980 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.4571 0.0 4.24793    
cufflinks 2.00201 0.0 5.66997   High
cufflinks 1.3872 0.0 4.08592    
cufflinks 0.405965 0.0 1.39398 Low Low
cufflinks 0.44193 0.0 1.49609 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain