Protein Family : nonsense-mediated decay UPF3, putative, expressed 123425600

Method ID:  5275 Method Name:  Viridiplantae
Sequence Alignment:  View MSA Member Count:  122

122 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
29765.t000010 (1 of 1) PTHR13112//PTHR13112:SF0 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN // FI21285P1 R. communis v0.1 7573   29765: 93552-101124
30170.t000145 (1 of 1) PTHR13112//PTHR13112:SF3 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN // SUBFAMILY NOT NAMED R. communis v0.1 3908   30170: 4653417-4657324
Cucsa.061690 (1 of 1) PTHR13112 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN C. sativus v1.0 6964   scaffold00651: 183865-190828
orange1.1g010224m.g (1 of 1) PTHR13112:SF0 - FI21285P1 C. sinensis v1.1 8458   scaffold00792: 12384-20841
orange1.1g009733m.g (1 of 1) PTHR13112//PTHR13112:SF3 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN C. sinensis v1.1 6620   scaffold00363: 98421-105040
AT1G33980 (1 of 1) K14328 - regulator of nonsense transcripts 3 (UPF3, RENT3) A. thaliana TAIR10 UPF3 3431   Chr1: 12351593-12355023
Thhalv10007455m.g (1 of 1) PTHR13112 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN E. salsugineum v1.0 3838   scaffold_5: 1136822-1140659
Ciclev10000901m.g (1 of 1) PTHR13112:SF0 - FI21285P1 C. clementina v1.0 8767   scaffold_5: 4461971-4470737
Ciclev10019695m.g (1 of 4) PTHR13112//PTHR13112:SF3 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN C. clementina v1.0 7122   scaffold_3: 19310540-19317661
Lus10003510.g (1 of 2) PTHR13112//PTHR13112:SF3 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN L. usitatissimum v1.0 1876   scaffold144: 27942-29817
Lus10037346.g (1 of 3) PTHR13112:SF0 - FI21285P1 L. usitatissimum v1.0 3955   scaffold462: 1423142-1427096
Lus10035769.g (1 of 3) PTHR13112:SF0 - FI21285P1 L. usitatissimum v1.0 4528   scaffold464: 1268974-1273501
Lus10009488.g (1 of 2) PTHR13112//PTHR13112:SF3 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN L. usitatissimum v1.0 2516   scaffold981: 356835-359350
Gorai.008G045900 (1 of 2) PTHR13112:SF0 - FI21285P1 G. raimondii v2.1 6349   Chr08: 6206289-6212637
Gorai.010G229700 (1 of 2) PTHR13112//PTHR13112:SF3 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN G. raimondii v2.1 5794   Chr10: 60134003-60139796
Gorai.005G265700 (1 of 2) PTHR13112:SF0 - FI21285P1 G. raimondii v2.1 5786   Chr05: 63895783-63901568
fgenesh1_pg_17_num_108 (1 of 1) PTHR13112 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN C. subellipsoidea C-169 v2.0 2555   scaffold_17: 963819-966373
MicpuC2.EuGene.0000050139 (1 of 1) PTHR13112 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN M. pusilla CCMP1545 v3.0 1254   scaffold_5: 269738-270991
EuGene.0600010590 (1 of 1) PTHR13112 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN M. sp RCC299 v3.0 1727   Chr_06: 1169462-1171188
eugene.0800010036 (1 of 1) PTHR13112 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN O. lucimarinus v2.0 978   Chr_8: 57037-58014
Thecc1EG006150 (1 of 1) PTHR13112//PTHR13112:SF0 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN // FI21285P1 T. cacao v1.1 6099   scaffold_2: 981167-987265
Thecc1EG028841 (1 of 1) PTHR13112//PTHR13112:SF3 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN // SUBFAMILY NOT NAMED T. cacao v1.1 13490   scaffold_6: 18791650-18805139
Migut.N00848 (1 of 2) PTHR13112 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN M. guttatus v2.0 8339   scaffold_14: 5290122-5298460
Migut.B00752 (1 of 2) PTHR13112 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN M. guttatus v2.0 6959   scaffold_2: 4264224-4271182
Araha.25545s0002 (1 of 1) PTHR13112 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN A. halleri v1.1 2823   Scaffold25545: 1490-4312
Cagra.6333s0004 (1 of 1) PTHR13112 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN C. grandiflora v1.1 3515   Scaffold6333: 17986-21500
Glyma.04G257000 (1 of 1) PF02362//PF03467 - B3 DNA binding domain (B3) // Smg-4/UPF3 family (Smg4_UPF3) G. max Wm82.a2.v1 13676   Chr04: 52314502-52328177
Glyma.06G324500 (1 of 3) PTHR13112//PTHR13112:SF3 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN G. max Wm82.a2.v1 9560   Chr06: 51224621-51234180
Glyma.12G165900 (1 of 2) PTHR13112:SF0 - FI21285P1 G. max Wm82.a2.v1 6290   Chr12: 32018880-32025169
Glyma.16G002300 (1 of 2) PTHR13112:SF0 - FI21285P1 G. max Wm82.a2.v1 6771   Chr16: 114807-121577

122 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
30170.m013733 R. communis v0.1 123425600 nonsense-mediated decay UPF3, putative, expressed 2 5275 Viridiplantae
29765.m000728 R. communis v0.1 123425600 nonsense-mediated decay UPF3, putative, expressed 2 5275 Viridiplantae
Cucsa.061690.1 C. sativus v1.0 123425600 nonsense-mediated decay UPF3, putative, expressed 1 5275 Viridiplantae
orange1.1g010224m C. sinensis v1.1 123425600 nonsense-mediated decay UPF3, putative, expressed 2 5275 Viridiplantae
orange1.1g009733m C. sinensis v1.1 123425600 nonsense-mediated decay UPF3, putative, expressed 2 5275 Viridiplantae
AT1G33980.2 A. thaliana TAIR10 123425600 nonsense-mediated decay UPF3, putative, expressed 1 5275 Viridiplantae
Thhalv10007455m E. salsugineum v1.0 123425600 nonsense-mediated decay UPF3, putative, expressed 1 5275 Viridiplantae
Ciclev10000901m C. clementina v1.0 123425600 nonsense-mediated decay UPF3, putative, expressed 2 5275 Viridiplantae
Ciclev10019695m C. clementina v1.0 123425600 nonsense-mediated decay UPF3, putative, expressed 2 5275 Viridiplantae
Lus10003510 L. usitatissimum v1.0 123425600 nonsense-mediated decay UPF3, putative, expressed 4 5275 Viridiplantae
Lus10037346 L. usitatissimum v1.0 123425600 nonsense-mediated decay UPF3, putative, expressed 4 5275 Viridiplantae
Lus10035769 L. usitatissimum v1.0 123425600 nonsense-mediated decay UPF3, putative, expressed 4 5275 Viridiplantae
Lus10009488 L. usitatissimum v1.0 123425600 nonsense-mediated decay UPF3, putative, expressed 4 5275 Viridiplantae
Gorai.008G045900.1 G. raimondii v2.1 123425600 nonsense-mediated decay UPF3, putative, expressed 3 5275 Viridiplantae
Gorai.010G229700.1 G. raimondii v2.1 123425600 nonsense-mediated decay UPF3, putative, expressed 3 5275 Viridiplantae
Gorai.005G265700.1 G. raimondii v2.1 123425600 nonsense-mediated decay UPF3, putative, expressed 3 5275 Viridiplantae
44353 C. subellipsoidea C-169 v2.0 123425600 nonsense-mediated decay UPF3, putative, expressed 1 5275 Viridiplantae
57834 M. pusilla CCMP1545 v3.0 123425600 nonsense-mediated decay UPF3, putative, expressed 1 5275 Viridiplantae
59588 M. sp RCC299 v3.0 123425600 nonsense-mediated decay UPF3, putative, expressed 1 5275 Viridiplantae
32910 O. lucimarinus v2.0 123425600 nonsense-mediated decay UPF3, putative, expressed 1 5275 Viridiplantae
Thecc1EG006150t1 T. cacao v1.1 123425600 nonsense-mediated decay UPF3, putative, expressed 2 5275 Viridiplantae
Thecc1EG028841t3 T. cacao v1.1 123425600 nonsense-mediated decay UPF3, putative, expressed 2 5275 Viridiplantae
Migut.N00848.1.p M. guttatus v2.0 123425600 nonsense-mediated decay UPF3, putative, expressed 2 5275 Viridiplantae
Migut.B00752.1.p M. guttatus v2.0 123425600 nonsense-mediated decay UPF3, putative, expressed 2 5275 Viridiplantae
Araha.25545s0002.1.p A. halleri v1.1 123425600 nonsense-mediated decay UPF3, putative, expressed 1 5275 Viridiplantae
Cagra.6333s0004.1.p C. grandiflora v1.1 123425600 nonsense-mediated decay UPF3, putative, expressed 1 5275 Viridiplantae
Glyma.12G165900.1.p G. max Wm82.a2.v1 123425600 nonsense-mediated decay UPF3, putative, expressed 4 5275 Viridiplantae
Glyma.04G257000.1.p G. max Wm82.a2.v1 123425600 nonsense-mediated decay UPF3, putative, expressed 4 5275 Viridiplantae
Glyma.06G324500.1.p G. max Wm82.a2.v1 123425600 nonsense-mediated decay UPF3, putative, expressed 4 5275 Viridiplantae
Glyma.16G002300.1.p G. max Wm82.a2.v1 123425600 nonsense-mediated decay UPF3, putative, expressed 4 5275 Viridiplantae